| ncRNA ID | novel_osa_miR478 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr3:30515077-30515177 [+] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1738244;SRR1742988;SRR1742989;SRR1742990;SRR1742991;SRR1742993;SRR1298758;SRR1742996;SRR1743006;SRR1849766;SRR1849768;SRR1849772;SRR1849775;SRR1849776;SRR1849778;SRR1849779;SRR1849781;SRR1849784;SRR1849786;SRR1849787;SRR1849788;SRR2040380;SRR2040384;SRR2040385;SRR2040388;SRR2040392;SRR2040394;SRR2040396;SRR2040408;SRR2098557;SRR2098560;SRR2857729;SRR2857730;SRR2857731;SRR2857733;SRR2857735;SRR2857736;SRR3123630;SRR3123650;SRR4407954;SRR4407955;SRR4407957;SRR4407960;SRR4407961;SRR5049778;SRR5049779;SRR5049781;SRR5049782;SRR5049785;SRR5049786;SRR5049787;SRR5049790;SRR5049791;SRR5049792;SRR1609312;SRR1609317;SRR1612404;SRR1300837;SRR1738209;SRR1738211;SRR1738212;SRR1738214;SRR1460506;SRR1738216;SRR1738217;SRR1738219;SRR1738222;SRR1738223;SRR1738225;SRR1738237;SRR1738239 |
| Length | 24 |
| Mature sequence(if miRNA) | 78 - UUUUUUUUCUAGGACAGAGGGAGU - 101 |
| Stem-loop(if miRNA) |
-- A C - C A UCCCUCU UCC AGAAAAAAA CAAUUCCUAGCUUUG AUUUGGAUAA C ||||||| ||| ||||||||| ||||||||||||||| |||||||||| AGGGAGA AGG UCUUUUUUU GUUAAGGAUUGAAAU UAGACUUGUU A UG C A U U A |
| Stem-loop sequence | UCCCUCUAUCCCAGAAAAAAACAAUUCCUAGCUUUGCAUUUGGAUAAACAAUUGUUCAGAUUUAAAGUUAGGAAUUGUUUUUUUUCUAGGACAGAGGGAGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CT836306.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025E20, full insert sequence | NA | coding protein | psRNATarget |