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BaseInfo

ncRNA ID	novel_osa_miR477
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:1393275-1393475 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1743002;SRR1849765;SRR1849766;SRR1849767;SRR1849768;SRR1849771;SRR1849772;SRR1849776;SRR2040380;SRR2040381;SRR2040383;SRR2040384;SRR2040387;SRR2040388;SRR2040389;SRR2040391;SRR2040393;SRR2040394;SRR2040396;SRR2040397;SRR2040399;SRR2040402;SRR2040403;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040410;SRR2040411;SRR2857730;SRR2857734;SRR3123650;SRR5351739;SRR1609317;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - AACGUAGAUUACUGACAAAACUCA - 24
Stem-loop(if miRNA)	--                     U            UA      A   C  A   C            G AU      UC     UAGCGAAUGA         C   AACGUAGAUUACUGACAAAAC CAUUUCAUAACU  UGGGCU AUU GC AGA GAAUCUAACGAG U  AUUAAU  AUGAU          UUACUGUAG A   ||||||||||||||||||||| ||||||||||||  |||||| ||| || ||| |||||||||||| |  ||||||  |||||          ||||||||| U   UUGCAUUUAAUGACUGUUUUG GUAAAGUAUUGG  AUCCGA UAA CG UCU CUUAGAUUGCUC G  UAAUUA  UACUA          AGUGAUGUC C AU                     U            GG      C   A  C   A            G AU      GA     ----------         A
Stem-loop sequence	AACGUAGAUUACUGACAAAACUCAUUUCAUAACUUAUGGGCUAAUUCGCAAGACGAAUCUAACGAGGUAUAUUAAUUCAUGAUUAGCGAAUGAUUACUGUAGCAUCACUGUAGUGAAUCAUAGAUUAAUUAGGCUCGUUAGAUUCAUCUCGCAAAUCAGCCUAGGGGUUAUGAAAUGUGUUUUGUCAGUAAUUUACGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015762321.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |||*||||*||||||||||||||| targets:1109   UGAAUUUUAUCAGUAAUCUACGUU   1132 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK240978.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*||||||||*|||||||||=||| targets:540   UUAGUUUUGUAAGUAAUCUAUGUU   563 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015781418.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1305   UAGGUUUUAUCAGUAAUCUAUGUU   1328 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1216   UAGGUUUUAUCAGUAAUCUAUGUU   1239 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |**|||||||=|*||||||||||| targets:21   UUUGUUUUGUUAUUAAUCUACGUU   44 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget