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BaseInfo

ncRNA ID novel_osa_miR474
Species Oryza sativa
Class miRNA
Genome position Chr2:4763397-4763473 [-]
Reference genome IRGSP-1.0
Source SRR1738244
Length 20
Mature sequence(if miRNA) 1 - AACAAAACUUGAGCUGUAGA - 20
Stem-loop(if miRNA) --   C         C                  -   A
  UAC GCUUAAGUU UGUUUUAAAAUGAAGCUA AUU G
  ||| ||||||||| |||||||||||||||||| |||
  AUG CGAGUUCAA ACAAAAUUUUACUUCGAU UAG G
AG   U         A                  C   U
Stem-loop sequence UACCGCUUAAGUUCUGUUUUAAAAUGAAGCUAAUUAGGUGAUCUAGCUUCAUUUUAAAACAAAACUUGAGCUGUAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015783981.1
ncRNA:20   AGAUGUCGAGUUCAAAACAA   1
  |||||*||||||*|||||||
targets:2620   UCUACUGCUCAAUUUUUGUU   2639

2.5 PREDICTED: Oryza sativa Japonica Group putative rRNA methyltransferase (LOC4339641), mRNA putative rRNA methyltransferase(LOC4339641) coding protein psRNATarget
AK101119.1
ncRNA:20   AGAUGUCGAGUUCAAAACAA   1
  |||||*||||||*|||||||
targets:2628   UCUACUGCUCAAUUUUUGUU   2647

2.5 Oryza sativa Japonica Group cDNA clone:J033025I04, full insert sequence NA coding protein psRNATarget