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BaseInfo

ncRNA ID	novel_osa_miR470
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:33652032-33652231 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1742988;SRR1849775;SRR2040404;SRR2040409;SRR2890846;SRR5351739
Length	24
Mature sequence(if miRNA)	177 - AAACGUAGACUAUUAAUAAAACCU - 200
Stem-loop(if miRNA)	--AAAC          A       -CUAUC     -UCUU  A      UG          CUAA               C        CCU    GA   U       GUAGACUAUU AUAAAAC      CAUAA     GG CUAAUU  CGAGACGAAU    UGAGCCUAAUUAAUC AUGAUUAG   AUGU  UGC A       |||||||||| |||||||      |||||     || ||||||  ||||||||||    ||||||||||||||| ||||||||   ||||  |||       UAUUUGAUGA UGUUUUG      GUAUU     UC GAUUAA  GCUCUGUUUA    AUUCGGAUUAAUUAG UAUUAAUC   UACA  AUG C AAUUUA          A       AUUAAU     UAUUU  -      GU          AAAA               A        UCU    -A   A
Stem-loop sequence	AAACGUAGACUAUUAAUAAAACCUAUCCAUAAUCUUGGACUAAUUUGCGAGACGAAUCUAAUGAGCCUAAUUAAUCCAUGAUUAGCCUAUGUGAUGCUACAGUAAACAUUCUCUAAUUAUAGAUUAAUUAGGCUUAAAAAAUUUGUCUCGUGAAUUAGCUUUUAUUUAUGUAAUUAGUUUUGUAAGUAGUUUAUAUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767213.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =||||||||||||||||||||||| targets:1986   GGGUUUUAUUAAUAGUCUACGUUU   2009 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767222.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =||||||||||||||||||||||| targets:1968   GGGUUUUAUUAAUAGUCUACGUUU   1991 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK101033.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =||||||||||||||||||||||| targets:1969   GGGUUUUAUUAAUAGUCUACGUUU   1992 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =||||||||||||||||||||||| targets:137   GGGUUUUAUUAAUAGUCUACGUUU   160 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
CT833304.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =||||||||||||||||||||||| targets:1368   GGGUUUUAUUAAUAGUCUACGUUU   1391 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK288873.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =*|||||||||||||||||||||| targets:5662   GUGUUUUAUUAAUAGUCUACGUUU   5685 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   =||||||||||||||||||||*|| targets:1514   GGGUUUUAUUAAUAGUCUACGGUU   1537 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   UCC-AAAAUAAUUAUCAGAUGCAAA   1   *||-|||||||=||||||||||||| targets:4800   UGGAUUUUAUUGAUAGUCUACGUUU   4824 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   **|||||||||*|||||||||||| targets:1802   UUGUUUUAUUAUUAGUCUACGUUU   1825 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   **|||||=|||*|||||||||||| targets:2059   UUGUUUUGUUAUUAGUCUACGUUU   2082 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   **|||||=|||*|||||||||||| targets:948   UUGUUUUGUUACUAGUCUACGUUU   971 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   ***||||=|||*|||||||||||| targets:105   UUAUUUUGUUAUUAGUCUACGUUU   128 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:24   UCCAAAAUAAUUAUCAGAUGCAAA   1   ***||||=|||*|||||||||||| targets:105   UUAUUUUGUUAUUAGUCUACGUUU   128 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget