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BaseInfo

ncRNA ID	novel_osa_miR436
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:19610695-19610835 [-]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1743000;SRR2857736;SRR2890846;SRR3123630;SRR3123653;SRR1738225
Length	24
Mature sequence(if miRNA)	118 - AGAUUCUGCCUGUAAACUGCGAGA - 141
Stem-loop(if miRNA)	AGAUUC   C      C              A  A          AUU      --------UAGCAA     UA       UGC UGUAAA UGCGAGACGAAUUU UU AGCCUAAUUA   UGUCAU              AUGUU  C       ||| |||||| |||||||||||||| || ||||||||||   ||||||              |||||       ACG ACAUUU ACGCUCUGUUUAGA AA UCGGAUUAAU   GCGGUA              UACGA  U UGUCAA   U      A              A  C          ---      CUAAACUAUUACAC     UA
Stem-loop sequence	AGAUUCUGCCUGUAAACUGCGAGACGAAUUUAUUAAGCCUAAUUAAUUUGUCAUUAGCAAAUGUUUACUAUAGCAUCACAUUAUCAAAUCAUGGCGUAAUUAGGCUCAAAAGAUUUGUCUCGCAAUUUACAUGCAAACUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   |||||||||||||||||=|||||| targets:806   UCUCGCAGUUUACAGGCGGAAUCU   829 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   |||||||||||||||||=|||||| targets:1773   UCUCGCAGUUUACAGGCGGAAUCU   1796 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   |||||||||||||||||=|||||| targets:446   UCUCGCAGUUUACAGGCGGAAUCU   469 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   |||||||||||||||||=|||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   |||||||||||||||||=|||||| targets:2049   UCUCGCAGUUUACAGGCGGAAUCU   2072 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   |||||||||||||||||=|||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AK241427.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   ||||||=|||||||||||*||||| targets:1533   UCUCGCGGUUUACAGGCAUAAUCU   1556 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065161N01, full insert sequence	NA	coding protein	psRNATarget
AK288343.1	ncRNA:24   AGAGCGUCAAAUGUCCGUCUUAGA   1   *|||*||||||||||||||||||| targets:361   CCUCACAGUUUACAGGCAGAAUCU   384 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget