Search result

BaseInfo

ncRNA ID	novel_osa_miR433
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:26930694-26930740 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR3123653
Length	21
Mature sequence(if miRNA)	27 - UGGCGCGCAUCCCCGUCGAGC - 47
Stem-loop(if miRNA)	--   C     C        -  C   UCG CGGGG UGCGUGCC GC A   ||| ||||| |||||||| ||   AGC GCCCC ACGCGCGG CG U CG   U     U        U  A
Stem-loop sequence	UCGCCGGGGCUGCGUGCCGCCAUAGCUGGCGCGCAUCCCCGUCGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK069083.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   |=|||*||||||*|||||||| targets:412   GUUCGCCGGGGAGGCGCGCCA   432 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023009C02, full insert sequence	NA	coding protein	psRNATarget
XM_015790892.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   |=|||*||||||*|||||||| targets:560   GUUCGCCGGGGAGGCGCGCCA   580 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (LOC4343946), mRNA	phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic(LOC4343946)	coding protein	psRNATarget
AK069968.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   |=|||*||||||*|||||||| targets:412   GUUCGCCGGGGAGGCGCGCCA   432 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023038D13, full insert sequence	NA	coding protein	psRNATarget
AK105687.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   |=|||*||||||*|||||||| targets:411   GUUCGCCGGGGAGGCGCGCCA   431 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-201-B12, full insert sequence	NA	coding protein	psRNATarget
AB122058.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   |=|||*||||||*|||||||| targets:418   GUUCGCCGGGGAGGCGCGCCA   438 Target Full Sequence	2.5	Oryza sativa Japonica Group DAHPS2 mRNA for 3-deoxy-D-arabino heptulosonate-7-phosphate synthase, complete cds	NA	coding protein	psRNATarget
CT829012.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   |=|||*||||||*|||||||| targets:410   GUUCGCCGGGGAGGCGCGCCA   430 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019C11, full insert sequence	NA	coding protein	psRNATarget
XM_015761779.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   *||||*|||*||||||||||| targets:4316   CCUCGUCGGCGAUGCGCGCCA   4336 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9267287), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9267287)	coding protein	psRNATarget
XM_015761782.1	ncRNA:21   CGAGCUGCCCCUACGCGCGGU   1   *||||*|||*||||||||||| targets:3591   CCUCGUCGGCGAUGCGCGCCA   3611 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g52620 (LOC9267287), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g52620(LOC9267287)	coding protein	psRNATarget