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BaseInfo

ncRNA ID	novel_osa_miR431
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:2523244-2523314 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1742994;SRR1849765;SRR1849767;SRR1849769;SRR1849770;SRR1849773;SRR2040381;SRR2040387;SRR2040393;SRR2040397;SRR2040400;SRR2040411;SRR3123645;SRR3123651;SRR3123653;SRR5049788;SRR1738226;SRR1738240
Length	24
Mature sequence(if miRNA)	48 - ACUAGAUUUGUUUAUUUUGGGACG - 71
Stem-loop(if miRNA)	--            A            UU     U   UCCCAAAAUGAA AAAUCUAGUACA  AUGUG U   |||||||||||| ||||||||||||  ||||| U   AGGGUUUUAUUU UUUAGAUCAUGU  UAUAC G GC            G            CC     A
Stem-loop sequence	UCCCAAAAUGAAAAAAUCUAGUACAUUAUGUGUUUGACAUAUCCUGUACUAGAUUUGUUUAUUUUGGGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015771059.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   =||||||*||*||||||||||||| targets:3088   UGUCCCAUAAAAAACAAAUCUAGU   3111 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group SART-1 family protein DOT2 (LOC4329455), transcript variant X2, mRNA	SART-1 family protein DOT2(LOC4329455)	coding protein	psRNATarget
AK120132.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:1848   CGUCCCAUAAAAAACAAAUCUAGA   1871 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013027B10, full insert sequence	NA	coding protein	psRNATarget
XM_015780717.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:1849   CGUCCCAUAAAAAACAAAUCUAGA   1872 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X5, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780715.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:1926   CGUCCCAUAAAAAACAAAUCUAGA   1949 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X3, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780713.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:1943   CGUCCCAUAAAAAACAAAUCUAGA   1966 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X1, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780718.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:1956   CGUCCCAUAAAAAACAAAUCUAGA   1979 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X6, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780716.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:2139   CGUCCCAUAAAAAACAAAUCUAGA   2162 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X4, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780714.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |||||||*||*||||||||||||* targets:2156   CGUCCCAUAAAAAACAAAUCUAGA   2179 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X2, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015775913.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   *||=*||||||||||*|||||||| targets:740   AGUUGCAAAAUAAACCAAUCUAGU   763 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334008 (LOC4334008), mRNA	uncharacterized LOC4334008(LOC4334008)	coding protein	psRNATarget
AK288920.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |*||||=|||*||||||||||||* targets:854   CAUCCCGAAAAAAACAAAUCUAGA   877 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
CT835495.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   **||||||||*|||||||||||*| targets:636   ACUCCCAAAAAAAACAAAUCUAAU   659 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069D03, full insert sequence	NA	coding protein	psRNATarget
CT834276.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |*|||||*||*||||||||||||* targets:1753   CAUCCCAUAAAAAACAAAUCUAGG   1776 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F09, full insert sequence	NA	coding protein	psRNATarget
AK067550.1	ncRNA:24   GCAGGGUUUUAUUUGUUUAGAUCA   1   |*|*=||=||||||||||*||||| targets:290   CAUAUCAGAAUAAACAAAACUAGU   313 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013108F24, full insert sequence	NA	coding protein	psRNATarget