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BaseInfo

ncRNA ID novel_osa_miR424
Species Oryza sativa
Class miRNA
Genome position Chr9:5320619-5320701 [+]
Reference genome IRGSP-1.0
Source SRR1738243;SRR1738244;SRR1743006;SRR1849769;SRR2040381;SRR2040385;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040390;SRR2040391;SRR2040392;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040402;SRR2040403;SRR2040404;SRR2040405;SRR2040411;SRR3123653
Length 21
Mature sequence(if miRNA) 1 - UUAGUCCCGGUUUGUAGUACC - 21
Stem-loop(if miRNA) --       C    U      C         C   A    U
  UUAGUCC GGUU GUAGUA CAACUGGGA UAA GAUC A
  ||||||| |||| |||||| ||||||||| ||| |||| A
  AAUCAGG CCAA CAUCAU GUUGGCCCU AUU UUAG A
GA       U    C      U         C   A    U
Stem-loop sequence UUAGUCCCGGUUUGUAGUACCAACUGGGACUAAAGAUCUAAAUGAUUAUUACUCCCGGUUGUUACUACCAACCUGGACUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK061057.1
ncRNA:21   CCAUGAUGUUUGGCCCUGAUU   1
  ||||*|||*||||||||||||
targets:370   GGUAAUACCAACCGGGACUAA   390

2.5 Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence NA coding protein psRNATarget
AK288424.1
ncRNA:21   CCAUGAUGUUUGGCCCUGAUU   1
  ||||*|||*||||||||||||
targets:1386   GGUAAUACCAACCGGGACUAA   1406

2.5 Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence NA coding protein psRNATarget
XM_015759969.1
ncRNA:21   CCAUGAUGUUUGGCCCUGAUU   1
  ***|=||*|||||||||||||
targets:1815   CACAUUAAAAACCGGGACUAA   1835

3.0 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA F-box/LRR-repeat protein At3g58930(LOC9269963) coding protein psRNATarget
XM_015759968.1
ncRNA:21   CCAUGAUGUUUGGCCCUGAUU   1
  ***|=||*|||||||||||||
targets:3313   CACAUUAAAAACCGGGACUAA   3333

3.0 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA F-box/LRR-repeat protein At3g58930(LOC9269963) coding protein psRNATarget
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