| ncRNA ID | novel_osa_miR420 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr9:12650337-12650539 [-] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1738243;SRR1743006;SRR1849765;SRR1849766;SRR1849767;SRR1849769;SRR1849771;SRR1849772;SRR1849773;SRR1849774;SRR1849775;SRR1849776;SRR2040384;SRR2040385;SRR2040386;SRR2040394;SRR2040402;SRR2040403;SRR2040404;SRR2040406;SRR2040407;SRR2040410;SRR2857735;SRR3123630;SRR3123650;SRR3123653;SRR3234044;SRR5049779;SRR5049790;SRR1738214;SRR1738225;SRR1738239 |
| Length | 24 |
| Mature sequence(if miRNA) | 180 - AAACGUAGAUUACUGAUAAAACCU - 203 |
| Stem-loop(if miRNA) |
--AAACG A C UA CU AUAU UC AU A --G UAC UAGAUUACUGAUAAAACCUAUU CAUAA CUCUGGGCUAAUUUG AGAUGAAUCUAA AG AUUAAU AU UU GC GAUGAU U |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| || |||||| || || || |||||| G AUCUAAUGACUAUUUUGGGUAA GUAUU GAGAUUCGAUUAAAU UCUGCUUAGAUU UC UAAUUA UA AA CG UUACUA U AAUAAAG A A GC AC GAAU GA CC A AUG CGA |
| Stem-loop sequence | AAACGUAGAUUACUGAUAAAACCUAUUACAUAACCUCUGGGCUAAUUUGUAAGAUGAAUCUAACUAGAUAUAUUAAUUCAUAUUUAGCGGAUGAUUACUGUAGCAUCAUUGUAGCAAACCAUAGAUUAAUUAAGCUCAUUAGAUUCGUCUCGUAAAUUAGCUUAGAGAUUAUGAAAUGGGUUUUAUCAGUAAUCUAGAAAUAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015781418.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA | serine/arginine repetitive matrix protein 1(LOC4335446) | coding protein | psRNATarget | |||||||||
| AK107263.1 |
|
1.5 | Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015762321.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA | transcription initiation factor TFIID subunit 13(LOC9268703) | coding protein | psRNATarget |