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BaseInfo

ncRNA ID	novel_osa_miR407
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:4605705-4605945 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR2040396;SRR2040400;SRR2857729;SRR3123630;SRR3123653;SRR1738225
Length	24
Mature sequence(if miRNA)	1 - AGUUUUUGUUUGCACUGUUUGACC - 24
Stem-loop(if miRNA)	--            CACU                    C           ----------------  A  A        UUUUU       U    -UA    C     U   --     CACAACUUUU   AGUUUUUGUUUG    GUUUGACCGCUCGUCUUAUU AAAAAAUUUUA                GA UU UUAUUUAU     UUUGACU ACUU   UUAU CAAAG AUU  UGAAG          U   ||||||||||||    |||||||||||||||||||| |||||||||||                || || ||||||||     ||||||| ||||   |||| ||||| |||  |||||   UUAAAAAUAAAU    CAAACUGGUGAGCAGAAUAA UUUUUUAAAGU                CU AA AAUGGAUA     AAACUGG UGAG   AAUA GUUUU UAA  ACUUU          A AC            AUCU                    U           AUUAUAUUCCCUAAAA  C  A        -UCUC       -    CAG    A     U   AU     UAUAUUUUUU
Stem-loop sequence	AGUUUUUGUUUGCACUGUUUGACCGCUCGUCUUAUUCAAAAAAUUUUAGAAUUAUUAUUUAUUUUUUUUUGACUUACUUUAUUAUCCAAAGUAUUUGAAGCACAACUUUUUAUUUUUUAUAUUUUCAUAAAUUUUUUGAAUAAGACGAGUGGUCAAACUCUAUAGGUAAAAACUCAAAAUCCCUUAUAUUAUGAAAUUUUUUUAAUAAGACGAGUGGUCAAACUCUAUAAAUAAAAAUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||||||||=|||||||| targets:674   GGUCAAACAGUGCAAGCAAAAACU   697 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:815   GGUCAAACGGUGCAAGCAAAAACU   838 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:876   GGUCAAACGGUGCAAGCAAAAACU   899 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288846.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |*|||||||||||||=|||||||| targets:63   GAUCAAACAGUGCAAGCAAAAACU   86 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK288977.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||*|*|||||||||||| targets:1829   GGUCAAACAAUACAAACAAAAACU   1852 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget