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BaseInfo

ncRNA ID	novel_osa_miR402
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:2390228-2390313 [-]
Reference genome	IRGSP-1.0
Source	SRR1460508
Length	25
Mature sequence(if miRNA)	1 - CACAUAUAUGAAUGUGGGCAAUGCU - 25
Stem-loop(if miRNA)	--G                  GA      AA     A    CA    GUUGCCCACAUUCAUAUA  UGUUAA  AAUCU GGCA  C    ||||||||||||||||||  ||||||  ||||| ||||    UAACGGGUGUAAGUAUAU  ACAAUU  UUAGA CUGU  A UCG                  AC      AC     A    AU
Stem-loop sequence	GGUUGCCCACAUUCAUAUAGAUGUUAAAAAAUCUAGGCACACAUAUGUCAAGAUUCAUUAACACAUAUAUGAAUGUGGGCAAUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763234.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||||||||||||||||||*|| targets:6292   AGCAUUGCCCACAUUCAUAUAUAUG   6316 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA	F-box protein At5g25290(LOC4326973)	coding protein	psRNATarget
XM_015769168.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||||||||||||||||||*|| targets:2682   AGCAUUGCCCACAUUCAUAUAUAUG   2706 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA	probable splicing factor 3A subunit 1(LOC4328860)	coding protein	psRNATarget
XM_015765333.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||||||||||||||||||*|| targets:2104   AGCAUUGCCCACAUUCAUAUAUAUG   2128 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
CT837661.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||||||||||||||||||*|| targets:1205   AGCAUUGCCCACAUUCAUAUAUAUG   1229 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence	NA	coding protein	psRNATarget
XM_015765335.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||||||||||||||||||*|| targets:1205   AGCAUUGCCCACAUUCAUAUAUAUG   1229 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
AK101666.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||=|||||||||||||||||||*|| targets:1600   AGUAUUGCCCACAUUCAUAUAUAUG   1624 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence	NA	coding protein	psRNATarget
AK070816.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   |*||||||||||||||||||||*|| targets:1281   AUCAUUGCCCACAUUCAUAUAUAUG   1305 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
XM_015779937.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||*||||||||||||||*||| targets:989   AGCAUUUCCCACAUUCAUAUAGGUG   1013 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA	small nuclear ribonucleoprotein Sm D1(LOC4336118)	coding protein	psRNATarget
XM_015779938.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   ||||||*||||||||||||||*||| targets:897   AGCAUUUCCCACAUUCAUAUAGGUG   921 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA	small nuclear ribonucleoprotein Sm D1(LOC4336118)	coding protein	psRNATarget
JB165024.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   |||||||*||||||||||||||*|| targets:12   AGCAUUGACCACAUUCAUAUAUAUG   36 Target Full Sequence	2.5	Sequence 2688 from Patent EP2559767	NA	coding protein	psRNATarget
HI404563.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   |||||||*||||||||||||||*|| targets:12   AGCAUUGACCACAUUCAUAUAUAUG   36 Target Full Sequence	2.5	Sequence 2688 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236693.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   |||||||*||||||||||||||*|| targets:12   AGCAUUGACCACAUUCAUAUAUAUG   36 Target Full Sequence	2.5	Sequence 2688 from Patent EP2985353	NA	coding protein	psRNATarget
AK069041.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   |*=|||||||||||||||||||*|| targets:2182   AUUAUUGCCCACAUUCAUAUAUAUG   2206 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023004J15, full insert sequence	NA	coding protein	psRNATarget
XM_015769449.1	ncRNA:25   UCGUAACGGGUGUAAGUAUAUACAC   1   |*||||||=|||||||||||||*|| targets:92   AACAUUGCUCACAUUCAUAUAUAUG   116 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF018-like (LOC107278604), mRNA	ethylene-responsive transcription factor ERF018-like(LOC107278604)	coding protein	psRNATarget