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BaseInfo

ncRNA ID novel_osa_miR395
Species Oryza sativa
Class miRNA
Genome position Chr7:2216767-2216862 [-]
Reference genome IRGSP-1.0
Source SRR1738243;SRR1742992;SRR1555746;SRR1743000;SRR1849765;SRR1849769;SRR1849770;SRR2040381;SRR2040387;SRR1298758;SRR2040393;SRR2040395;SRR2040397;SRR2040398;SRR2040400;SRR2040401;SRR2040411;SRR2097778;SRR2099745;SRR2099746;SRR2857728;SRR2857730;SRR2857732;SRR2857733;SRR2857734;SRR2857736;SRR2890846;SRR1556014;SRR3123646;SRR3123650;SRR3123651;SRR3123653;SRR3234042;SRR3234045;SRR4407777;SRR4407953;SRR5049784;SRR5049789;SRR5049791;SRR1609313;SRR1300837;SRR1738210;SRR1738223;SRR1738224;SRR1738228;SRR1738239;SRR1738240;SRR1738241
Length 21
Mature sequence(if miRNA) 76 - UGCCUGGCUCCCUGUAUGCCG - 96
Stem-loop(if miRNA) --   C    U  C         CU    UG  U      CC     ACU
  UGC UGGC CC UGUAUGCCG  CGCA  GC GCCAAC  AAUGA   C
  ||| |||| || |||||||||  ||||  || ||||||  |||||
  ACG ACCG GG GCGUGCGGC  GCGU  CG CGGUUG  UUGCU   G
GU   A    U  A         AU    --  C      --     CUA
Stem-loop sequence UGCCUGGCUCCCUGUAUGCCGCUCGCAUGGCUGCCAACCCAAUGAACUCGAUCUCGUUGUUGGCCGCUGCGUACGGCGUGCGAGGUGCCAAGCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK100322.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1997   AGGCAUACAGGGAGCCAGGCA   2017

0.0 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence NA coding protein psRNATarget
XM_015788651.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1880   AGGCAUACAGGGAGCCAGGCA   1900

0.0 PREDICTED: Oryza sativa Japonica Group auxin response factor 18 (LOC4341882), transcript variant X1, mRNA auxin response factor 18(LOC4341882) coding protein psRNATarget
XM_015788652.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1827   AGGCAUACAGGGAGCCAGGCA   1847

0.0 PREDICTED: Oryza sativa Japonica Group auxin response factor 18 (LOC4341882), transcript variant X2, mRNA auxin response factor 18(LOC4341882) coding protein psRNATarget
AK100795.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1486   AGGCAUACAGGGAGCCAGGCA   1506

0.0 Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence NA coding protein psRNATarget
XM_015759356.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1709   AGGCAUACAGGGAGCCAGGCA   1729

0.0 PREDICTED: Oryza sativa Japonica Group auxin response factor 22 (LOC4348918), mRNA auxin response factor 22(LOC4348918) coding protein psRNATarget
XM_015778359.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1526   AGGCAUACAGGGAGCCAGGCA   1546

0.0 PREDICTED: Oryza sativa Japonica Group auxin response factor 10 (LOC4336419), mRNA auxin response factor 10(LOC4336419) coding protein psRNATarget
AK318617.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1639   AGGCAUACAGGGAGCCAGGCA   1659

0.0 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence NA coding protein psRNATarget
CT835806.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1466   AGGCAUACAGGGAGCCAGGCA   1486

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN052M10, full insert sequence NA coding protein psRNATarget
XM_015767266.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1509   AGGCAUACAGGGAGCCAGGCA   1529

0.0 PREDICTED: Oryza sativa Japonica Group auxin response factor 8 (LOC4330045), mRNA auxin response factor 8(LOC4330045) coding protein psRNATarget
AK243230.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1401   AGGCAUACAGGGAGCCAGGCA   1421

0.0 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence NA coding protein psRNATarget
AB071299.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1368   AGGCAUACAGGGAGCCAGGCA   1388

0.0 Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds NA coding protein psRNATarget
XM_015755935.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  =|||||=||||||||||||*|
targets:1458   UGGCAUGCAGGGAGCCAGGGA   1478

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347316 (LOC4347316), mRNA uncharacterized LOC4347316(LOC4347316) coding protein psRNATarget
AK101607.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  =|||||=||||||||||||*|
targets:1452   UGGCAUGCAGGGAGCCAGGGA   1472

2.5 Oryza sativa Japonica Group cDNA clone:J033052A16, full insert sequence NA coding protein psRNATarget
XM_015778930.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  =|*|||*||||||||||||||
targets:1309   UGACAUUCAGGGAGCCAGGCA   1329

2.0 PREDICTED: Oryza sativa Japonica Group auxin response factor 13 (LOC9269399), mRNA auxin response factor 13(LOC9269399) coding protein psRNATarget
AK109449.1
ncRNA:21   GCCGUAUGUCCCUCGGUCCGU   1
  =|*|||*||||||||||||||
targets:1282   UGACAUUCAGGGAGCCAGGCA   1302

2.0 Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence NA coding protein psRNATarget
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