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BaseInfo

ncRNA ID	novel_osa_miR390
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:6894490-6894577 [-]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1849765;SRR1849769;SRR2040381;SRR2040393;SRR2040395;SRR2040401;SRR2040411;SRR2857728;SRR2857729;SRR2857732;SRR3123650;SRR3123653;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - AUUUUUAGUCCCGGAUUCGUAGUC - 24
Stem-loop(if miRNA)	--       -             --           C       A   UUACGAA CCGGGACUAAAGA  UCUAUUUUUAG CCCGGUU U   ||||||| |||||||||||||  ||||||||||| ||||||| U   GAUGCUU GGCCCUGAUUUUU  AGAUGAAAAUC GGGCCAA U CU       A             AU           A       C
Stem-loop sequence	UUACGAACCGGGACUAAAGAUCUAUUUUUAGCCCCGGUUAUUUCAACCGGGACUAAAAGUAGAUAUUUUUAGUCCCGGAUUCGUAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288863.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   |||||||||||||||||||||||| targets:987   GACUACGAAUCCGGGACUAAAAAU   1010 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090077I20, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   |||||||||||||||||||||=|| targets:613   GACUACGAAUCCGGGACUAAAGAU   636 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   |||||||||||||||||||||=|| targets:1682   GACUACGAAUCCGGGACUAAAGAU   1705 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   |||||||||||||||||||||=|| targets:1303   GACUACGAAUCCGGGACUAAAGAU   1326 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK072169.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   |||||||||||||||||||||=|| targets:3274   GACUACGAAUCCGGGACUAAAGAU   3297 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013132E11, full insert sequence	NA	coding protein	psRNATarget
AK065634.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUU-UA   1   ||||||||||||||||||||||-|| targets:1872   GACUACGAAUCCGGGACUAAAAGAU   1896 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence	NA	coding protein	psRNATarget
AK105552.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   ||||||*||||||||||||||||| targets:1207   GACUACCAAUCCGGGACUAAAAAU   1230 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015778766.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   ||||||*||||||||||||||=|| targets:993   GACUACCAAUCCGGGACUAAAGAU   1016 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group jacalin-related lectin 9 (LOC4335495), mRNA	jacalin-related lectin 9(LOC4335495)	coding protein	psRNATarget
AK288462.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   ||||||||*||||||||||||=|| targets:2827   GACUACGACUCCGGGACUAAAGAU   2850 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036C06, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   ||*||*|||||||||||||||=|| targets:1845   GAGUAGGAAUCCGGGACUAAAGAU   1868 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   ||*|||*||||||||||||||=|| targets:1765   GAGUACCAAUCCGGGACUAAAGAU   1788 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:24   CUGAUGCUUAGGCCCUGAUUUUUA   1   ||*||**||||||||||||||||| targets:1717   GAGUAAUAAUCCGGGACUAAAAAU   1740 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget