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BaseInfo

ncRNA ID	novel_osa_miR388
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:20010206-20010377 [-]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1742988;SRR1742990;SRR1742993;SRR1742995;SRR1742996;SRR1743002;SRR1743006;SRR1849771;SRR1849772;SRR1849776;SRR2857735;SRR2857736;SRR3085192;SRR3123646;SRR3123648;SRR3123653;SRR5351737;SRR5351740;SRR5351742;SRR1738212;SRR1738214;SRR1738217;SRR1738219;SRR1738228;SRR1738235;SRR1738237
Length	24
Mature sequence(if miRNA)	149 - AUUUUCGUGUCCAACUUUGACUGU - 172
Stem-loop(if miRNA)	--A              -                  AUAAUUUUU      UUUGUAUUUUUAUUGUU      -U     AA    AU   U    UUUUCGUGUCCAAC UUUGACUGUCCGUCUUAU         UUAUAA                 GUUAGA  GAUAA  CAUG  UAA A    |||||||||||||| ||||||||||||||||||         ||||||                 ||||||  |||||  ||||  |||    AAAGGCACAGGUUG AAACUGGCAGGCAGAAUA         AAUAUU                 UAAUUU  CUGUU  GUGC  AUU U AUC              C                  AACUUUUUU      ------------UUUUU      UU     CA    GU   U
Stem-loop sequence	AUUUUCGUGUCCAACUUUGACUGUCCGUCUUAUAUAAUUUUUUUAUAAUUUGUAUUUUUAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUUAUAAUUUUUUCAAAUAAGACGGACGGUCAAACGUUGGACACGGAAACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242028.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   |||||||||||||||||||||||| targets:1620   ACAGUCAAAGUUGGACACGAAAAU   1643 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   |||||||||||||||||||||||| targets:1731   ACAGUCAAAGUUGGACACGAAAAU   1754 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   |||||||||||||||||||||||| targets:1737   ACAGUCAAAGUUGGACACGAAAAU   1760 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   |||||||||||||||||||||||| targets:1743   ACAGUCAAAGUUGGACACGAAAAU   1766 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK065455.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   |||||||||||||||=|||||||* targets:3096   ACAGUCAAAGUUGGAUACGAAAAC   3119 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:24   UGUCAGUUU-CAACCUGUGCUUUUA   1   ||=||||||-||||||||||||||| targets:3077   ACGGUCAAACGUUGGACACGAAAAU   3101 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUA   1   ||||----|||||||||||||=|||||| targets:2530   ACAGAUGAUCAAAGUUGGACAUGAAAAU   2557 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget
HI403772.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUA   1   ||||----|=||||||||||=||||||| targets:150   ACAGAUGAUUAAAGUUGGACGCGAAAAU   177 Target Full Sequence	2.5	Sequence 1897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235902.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUA   1   ||||----|=||||||||||=||||||| targets:150   ACAGAUGAUUAAAGUUGGACGCGAAAAU   177 Target Full Sequence	2.5	Sequence 1897 from Patent EP2985353	NA	coding protein	psRNATarget
JB164233.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUA   1   ||||----|=||||||||||=||||||| targets:150   ACAGAUGAUUAAAGUUGGACGCGAAAAU   177 Target Full Sequence	2.5	Sequence 1897 from Patent EP2559767	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   ||||*=|||||||||||||||||* targets:812   ACAGAUAAAGUUGGACACGAAAAA   835 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
XM_015762457.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   ||=*|=|||||||||||||||||* targets:2786   ACGAUUAAAGUUGGACACGAAAAC   2809 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X4, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762455.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   ||=*|=|||||||||||||||||* targets:2970   ACGAUUAAAGUUGGACACGAAAAC   2993 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X2, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762456.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   ||=*|=|||||||||||||||||* targets:2991   ACGAUUAAAGUUGGACACGAAAAC   3014 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X3, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
AK070816.1	ncRNA:24   UGUC----AGUUUCAACCUGUGCUUUUA   1   ||=|----||||||||||=||||||||* targets:1686   ACGGAUGAUCAAAGUUGGGCACGAAAAC   1713 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   UGUCAGUUUCAACCUGUGCUUUUA   1   |==*|||||||||||=|||||||* targets:2311   AUGAUCAAAGUUGGAUACGAAAAA   2334 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget