Search result

BaseInfo

ncRNA ID	novel_osa_miR372
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5172954-5173029 [-]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR3123653
Length	21
Mature sequence(if miRNA)	56 - UUUAGUCCCGGUUGAAAGAGC - 76
Stem-loop(if miRNA)	UUUA   CC G  GAAAGAGCUGACAUCACUUUUUACUCU     GUC  G UU                           U     |||  | ||                           U     AGA  A AU                           A ----   -- -  CAGGGCCAACUAAAAUGGUUGGCCCUG
Stem-loop sequence	UUUAGUCCCGGUUGAAAGAGCUGACAUCACUUUUUACUCUUUAGUCCCGGUUGGUAAAAUCAACCGGGACUAAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288191.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   |=|*||||||||||||||||| targets:2273   GUUAUUUCAACCGGGACUAAA   2293 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   |=|*||||||||||||||||| targets:1889   GUUAUUUCAACCGGGACUAAA   1909 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   |=|*||||||||||||||||| targets:2420   GUUAUUUCAACCGGGACUAAA   2440 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288799.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   |=|*||||||||||||||||| targets:306   GUUAUUUCAACCGGGACUAAA   326 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:21   CGAGAAA--GUUGGCCCUGAUUU   1   **|||||--|||||||||||||| targets:1748   AAUCUUUACCAACCGGGACUAAA   1770 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:21   CGAGAA-AGUUGGCCCUGAUUU   1   |=|||*-||||||||||||||| targets:1874   GUUCUCAUCAACCGGGACUAAA   1895 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   ****|||*||||||||||||| targets:1012   AGCAUUUGAACCGGGACUAAA   1032 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   |=|*|||||||*||||||||| targets:657   GUUAUUUCAACAGGGACUAAA   677 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   *||=*||*||||||||||||| targets:2357   ACUUCUUGAACCGGGACUAAA   2377 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   ***=|||*||||||||||||| targets:1300   AAAUUUUGAACCGGGACUAAA   1320 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK242216.1	ncRNA:21   CGAGAAAGUUGGCCCUGAUUU   1   **|||**|||||||||||||| targets:704   AAUCUACCAACCGGGACUAAA   724 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget