Search result

BaseInfo

ncRNA ID	novel_osa_miR363
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:22270615-22270758 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR3123653
Length	24
Mature sequence(if miRNA)	121 - GAUUUUUUGUGGGACGAAGGGAGU - 144
Stem-loop(if miRNA)	--     C A            C       G                C                 AG   AC   UCCCU C UCCCAUAAAAAA CAACCUG UAUUGGAGGUGAUAUU CCUAGUAUAACGAAUCU  GCA  C   ||||| | |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||  |||   AGGGA G AGGGUGUUUUUU GUUGGAU AUAACCUCCACUAUAA GGAUUAUGUUGCUUAGA  UGU  U UG     A C            A       G                A                 CU   CU
Stem-loop sequence	UCCCUCCAUCCCAUAAAAAACCAACCUGGUAUUGGAGGUGAUAUUCCCUAGUAUAACGAAUCUAGGCAACCUUCUGUUCAGAUUCGUUGUAUUAGGAAAUAUCACCUCCAAUAGUAGGUUGAUUUUUUGUGGGACGAAGGGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778888.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   |||||||*|||||||=|||||||| targets:1660   ACUCCCUCCGUCCCAUAAAAAAUC   1683 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group actin-related protein 2/3 complex subunit 2B (LOC4336383), transcript variant X2, mRNA	actin-related protein 2/3 complex subunit 2B(LOC4336383)	coding protein	psRNATarget
XM_015778887.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   |||||||*|||||||=|||||||| targets:1669   ACUCCCUCCGUCCCAUAAAAAAUC   1692 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group actin-related protein 2/3 complex subunit 2B (LOC4336383), transcript variant X1, mRNA	actin-related protein 2/3 complex subunit 2B(LOC4336383)	coding protein	psRNATarget
XM_015778889.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   |||||||*|||||||=|||||||| targets:1778   ACUCCCUCCGUCCCAUAAAAAAUC   1801 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group actin-related protein 2/3 complex subunit 2B (LOC4336383), transcript variant X3, mRNA	actin-related protein 2/3 complex subunit 2B(LOC4336383)	coding protein	psRNATarget
XM_015772470.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   |=|||*|||||||||=|||||||| targets:141   AUUCCAUUCGUCCCAUAAAAAAUC   164 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334633 (LOC4334633), mRNA	uncharacterized LOC4334633(LOC4334633)	coding protein	psRNATarget
XM_015764983.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   |||||||*||||||||||*||||| targets:3178   ACUCCCUCCGUCCCACAAUAAAUC   3201 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g15980 (LOC9267586), transcript variant X12, mRNA	pentatricopeptide repeat-containing protein At2g15980(LOC9267586)	coding protein	psRNATarget
XM_015764981.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   |||||||*||||||||||*||||| targets:3322   ACUCCCUCCGUCCCACAAUAAAUC   3345 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g15980 (LOC9267586), transcript variant X10, mRNA	pentatricopeptide repeat-containing protein At2g15980(LOC9267586)	coding protein	psRNATarget
XM_015757712.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   =||||||*|||||||||||||*|| targets:1000   GCUCCCUCCGUCCCACAAAAAUUC   1023 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase 5 (LOC4348303), transcript variant X1, mRNA	probable glycosyltransferase 5(LOC4348303)	coding protein	psRNATarget
XM_015757713.1	ncRNA:24   UGAGGGAAGCAGGGUGUUUUUUAG   1   =||||||*|||||||||||||*|| targets:1082   GCUCCCUCCGUCCCACAAAAAUUC   1105 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase 5 (LOC4348303), transcript variant X2, mRNA	probable glycosyltransferase 5(LOC4348303)	coding protein	psRNATarget