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BaseInfo

ncRNA ID	novel_osa_miR359
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13482365-13482505 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR3123653;SRR1738241
Length	22
Mature sequence(if miRNA)	120 - UCAAGGACCGUAAAAUUGCUCU - 141
Stem-loop(if miRNA)	--       C                               -AAAAA    G      A   ACGUA      A   AGCAAUU UAUGGUCCUUGAAGAGGUACUAUGAGGUACA      UUUA UGUAAA UUU     GGUACU A   ||||||| |||||||||||||||||||||||||||||||      |||| |||||| |||     ||||||   UCGUUAA AUGCCAGGAACUUUUCUAUGAUACUCCAUGU      AGAU ACAUUU AAA     CCAUGG A UC       A                               AAAAAA    A      -   -----      A
Stem-loop sequence	AGCAAUUCUAUGGUCCUUGAAGAGGUACUAUGAGGUACAAAAAAUUUAGUGUAAAAUUUACGUAGGUACUAAAAGGUACCAAAUUUACAAUAGAAAAAAAUGUACCUCAUAGUAUCUUUUCAAGGACCGUAAAAUUGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015791346.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   ||||=||||||||||||||||| targets:2401   AGAGUAAUUUUACGGUCCUUGA   2422 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA	cysteine-rich receptor-like protein kinase 10(LOC4343479)	coding protein	psRNATarget
AK288954.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   ||||||||||||||||=||||| targets:3531   AGAGCAAUUUUACGGUUCUUGA   3552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence	NA	coding protein	psRNATarget
AK066407.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   *|||||||||||||||=||||| targets:3812   UGAGCAAUUUUACGGUUCUUGA   3833 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063J08, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   ||||*||||||||||||||||| targets:3834   AGAGGAAUUUUACGGUCCUUGA   3855 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288582.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   =|||||||||||=||||||||* targets:2812   GGAGCAAUUUUAUGGUCCUUGU   2833 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
AK288182.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   *||||||||||||*|||||||| targets:1287   UGAGCAAUUUUACUGUCCUUGA   1308 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
XM_015774311.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   |*||||||||||||||*||||| targets:2713   AUAGCAAUUUUACGGUACUUGA   2734 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333352 (LOC4333352), mRNA	uncharacterized LOC4333352(LOC4333352)	coding protein	psRNATarget
XM_015786027.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   **|||||||*|||||||||||| targets:4596   UAAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
XM_015760251.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   *|||||*||||||*|||||||| targets:36   UGAGCAUUUUUACUGUCCUUGA   57 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5-like (LOC107279278), mRNA	protein FAR1-RELATED SEQUENCE 5-like(LOC107279278)	coding protein	psRNATarget
XM_015782488.1	ncRNA:22   UCUCGUUAAAAUGCCAGGAACU   1   *|**|||||||||*|||||||| targets:1968   UGCUCAAUUUUACAGUCCUUGA   1989 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g14170 (LOC4338774), mRNA	pentatricopeptide repeat-containing protein At4g14170(LOC4338774)	coding protein	psRNATarget