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BaseInfo

ncRNA ID	novel_osa_miR358
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13329786-13329990 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1742993;SRR3123653
Length	24
Mature sequence(if miRNA)	182 - AAAAUAUAUAGAACAUAAGAGUCC - 205
Stem-loop(if miRNA)	--U         A        C         A U A      CU       UU    C            UC         U          G   ---U    A    CUCUUGUGU UCUAUAUG UUUGUAUGU G C UGUUGG  UACAAUG  AAUA AUUAGUUGUUUC  UCAGUGGUA CAUGGUAUCA AGC    ACUC U    ||||||||| |||||||| ||||||||| | | ||||||  |||||||  |||| ||||||||||||  ||||||||| |||||||||| |||    ||||    GAGAAUACA AGAUAUAU AAACGUACA C G AUAACC  GUGUUAC  UUAU UAGUCAACAAAG  AGUUACCAU GUACCAUGGU UCG    UGAG A CCU         -        A         A U C      AG       -U    U            GA         U          G   UUGU    A
Stem-loop sequence	UCUCUUGUGUAUCUAUAUGCUUUGUAUGUAGUCAUGUUGGCUUACAAUGUUAAUACAUUAGUUGUUUCUCUCAGUGGUAUCAUGGUAUCAGAGCUACUCAUAAGAGUUGUUGCUGUGGUACCAUGUUACCAUUGAAGGAAACAACUGAUUUAUUUCAUUGUGGACCAAUACGUCAACAUGCAAAAUAUAUAGAACAUAAGAGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241757.1	ncRNA:24   CCUGAGAAUACAAGAUAUAUAAAA   1   **|=|||||*||||||||||*||| targets:581   CCAUUCUUAAGUUCUAUAUAGUUU   604 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065204E20, full insert sequence	NA	coding protein	psRNATarget
AK288436.1	ncRNA:24   CCUGAGAAUACAAGAUAUAUAAAA   1   |*|*||*|=||||||||||||||* targets:467   GCAAUCAUGUGUUCUAUAUAUUUC   490 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090033P03, full insert sequence	NA	coding protein	psRNATarget
XM_015761350.1	ncRNA:24   CCUGAGAAUACAAGAUAUAUAAAA   1   |*|*||*|=||||||||||||||* targets:2737   GCAAUCAUGUGUUCUAUAUAUUUC   2760 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g71060, mitochondrial (LOC4324492), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g71060, mitochondrial(LOC4324492)	coding protein	psRNATarget
XM_015761365.1	ncRNA:24   CCUGAGAAUACAAGAUAUAUAAAA   1   |*|*||*|=||||||||||||||* targets:2733   GCAAUCAUGUGUUCUAUAUAUUUC   2756 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g71060, mitochondrial (LOC4324492), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At1g71060, mitochondrial(LOC4324492)	coding protein	psRNATarget
XM_015761359.1	ncRNA:24   CCUGAGAAUACAAGAUAUAUAAAA   1   |*|*||*|=||||||||||||||* targets:2407   GCAAUCAUGUGUUCUAUAUAUUUC   2430 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g71060, mitochondrial (LOC4324492), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g71060, mitochondrial(LOC4324492)	coding protein	psRNATarget