Search result

BaseInfo

ncRNA ID	novel_osa_miR350
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:24990259-24990404 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR3123653;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - AUUUUACGGUCCUUGAGGAGGUAC - 24
Stem-loop(if miRNA)	--              G G                   CUUUUUC  U      -   AA      U      C   AUUUUACGGUCCUU A GAGGUACUAUGAGGUACCA       UA UGUAAA UUU  UAUCUC UAGUAC U   |||||||||||||| | |||||||||||||||||||       || |||||| |||  |||||| ||||||   UAAGAUGCCAGGAA U CUCCAUGGUACUCCAUGGU       AU ACAUUU AAA  AUGGAG AUCAUG A GU              A G                   -UUUUAA  C      U   CC      U      G
Stem-loop sequence	AUUUUACGGUCCUUGAGGAGGUACUAUGAGGUACCACUUUUUCUAUUGUAAAUUUAAUAUCUCUUAGUACCUAGGUACUAUGAGGUACCAAAUUUUACACUAAAUUUUUGGUACCUCAUGGUACCUCGUAAAGGACCGUAGAAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288182.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   |||=||||||||||||||||=||| targets:1423   GUAUCUCCUCAAGGACCGUAGAAU   1446 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   |||||||||=||||||||||=||| targets:1946   GUACCUCCUUAAGGACCGUAGAAU   1969 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK065584.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   |||||||||||||*|||||||||| targets:1467   GUACCUCCUCAAGAACCGUAAAAU   1490 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013033A03, full insert sequence	NA	coding protein	psRNATarget
AK120403.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   |||||||||||||*|||||||||| targets:1563   GUACCUCCUCAAGAACCGUAAAAU   1586 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013088K21, full insert sequence	NA	coding protein	psRNATarget
XM_015782130.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   |||||||||||||*|||||||||| targets:1927   GUACCUCCUCAAGAACCGUAAAAU   1950 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group leucine--tRNA ligase, cytoplasmic (LOC9272228), mRNA	leucine--tRNA ligase, cytoplasmic(LOC9272228)	coding protein	psRNATarget
XM_015789833.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   |||=|||||||||*|||||||||| targets:3322   GUAUCUCCUCAAGUACCGUAAAAU   3345 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC4324067), mRNA	receptor-like protein 12(LOC4324067)	coding protein	psRNATarget
XM_015779910.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   *||||||||||||||*|||||||| targets:549   AUACCUCCUCAAGGAACGUAAAAU   572 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
AK242639.1	ncRNA:24   CAUGGAGGAGUUCCUGGCAUUUUA   1   ||||-||=||||||||=||||||| targets:464   GUAC-UCUUCAAGGACUGUAAAAU   486 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090024A18, full insert sequence	NA	coding protein	psRNATarget
AK111757.1	ncRNA:24   CAUG--GAGGAGUUCCUGGCAUUUUA   1   ||||--=|=||*|||||||||||||| targets:837   GUACACUUUCUGAAGGACCGUAAAAU   862 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023060L20, full insert sequence	NA	coding protein	psRNATarget
XM_015785997.1	ncRNA:24   CAUG--GAGGAGUUCCUGGCAUUUUA   1   ||||--=|=||*|||||||||||||| targets:891   GUACACUUUCUGAAGGACCGUAAAAU   916 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group soluble inorganic pyrophosphatase (LOC4325072), mRNA	soluble inorganic pyrophosphatase(LOC4325072)	coding protein	psRNATarget