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BaseInfo

ncRNA ID	ath-miR841b-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:2184135-2184629 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	191 - UACGAGCCACUGGAAACUGAA - 211
Stem-loop(if miRNA)	C       CUAAC         CA     C       U          C    AA   C     A       CG CC    G  G     CAGU           CA          U       A     U    C       -C  U       -GC   A           A     CU           G          C     G          ACAAUAUCAGUAUAAA       CAAAUUAG UCCU AUCUCCU     CGCCAACUG  AAUGC UUGGAGU AUCCUCUUCA UUUC  AUC UUGUU GUGUUUU  G  AACU AA AACCU    AGUUAGGCAUU  AGGAUUGAAG CGUGUAG CAACA CAGU GCACCAA  AG ACCAUGU   AGA ACUCUGGUCUU AGUUG  UGUGAAUACGA CCACUGGAAA UGAAA AAACAAAGAA                AUUUCAU        A |||| |||||||     |||||||||  ||||| ||||||| |||||||||| ||||  ||| ||||| |||||||  |  |||| || |||||    |||||||||||  |||||||||| ||||||| ||||| |||| |||||||  || |||||||   ||| ||||||||||| |||||  ||||||||||| |||||||||| ||||| ||||||||||                ||||||| AGGA UAGAGGA     GUGGUUGAU  UUACG AACCUCA UAGGAGAAGU AAAG  UAG AACGA CACAAAG  U  UUGA UU UUGGA    UUAAUCCGUGA  UCCUAACUUC GCACAUC GUUGU GUUA CGUGGUU  UC UGGUACA   UCU UGAGAUCAGAA UCAAC  ACACUUAUGCU GGUGAUCUUU ACUUU UUUGUUUCUU                UAAAGUA        C     A       CGCUA         AG     U       U          A    AA   U     A       AU CA    G  A     UACU           AA          C       A     U    U       CA  -       ACA   A           C     AU           G          A     A          ----------------       AAAAACAU
Stem-loop sequence	UCCUCAUCUCCUCUAACCGCCAACUGCAAAUGCCUUGGAGUUAUCCUCUUCACUUUCAAAUCCUUGUUAGUGUUUUCGGCCAACUGAAGAACCUCAGUAGUUAGGCAUUCAAGGAUUGAAGUCGUGUAGACAACAUCAGUCGCACCAACAGUACCAUGUGCAGAAACUCUGGUCUUAAGUUGCUUGUGAAUACGAGCCACUGGAAACUGAAAGAAACAAAGAAACAAUAUCAGUAUAAAAUUUCAUCAAAUUAGACUACAAAAAAUGAAAUUUCUUUGUUUAUUUCAAUUUCUAGUGGGUCGUAUUCACAUACAACUCAAGACUAGAGUAUCUACAACAUGGUCUACUUGGUGCUAUUGUUGUUGACUACACGCCUUCAAUCCUAAAGUGCCUAAUUUCAUAGGUUAUUGAGUUACUUAGAAACACAAGCAAUGAUAAGAAAAUGAAGAGGAUUACUCCAAUGCAUUGAUAGUUGGUGAUCGCAGGAGAUAAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_179968.3	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:354   UUCAGUUUCCAGUGGGUCGUA   374 Target Full Sequence	1.5	Arabidopsis thaliana histone H2A 8 (HTA8), mRNA	histone H2A 8(HTA8)	coding protein	psRNATarget
BX821662.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:235   UUCAGUUUCCAGUGGGUCGUA   255 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL62ZC09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001336738.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:215   UUCAGUUUCCAGUGGGUCGUA   235 Target Full Sequence	1.5	Arabidopsis thaliana histone H2A 8 (HTA8), mRNA	histone H2A 8(HTA8)	coding protein	psRNATarget
NM_129438.2	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:228   UUCAGUUUCCAGUGGGUCGUA   248 Target Full Sequence	1.5	Arabidopsis thaliana histone H2A 8 (HTA8), mRNA	histone H2A 8(HTA8)	coding protein	psRNATarget
AY088573.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:228   UUCAGUUUCCAGUGGGUCGUA   248 Target Full Sequence	1.5	Arabidopsis thaliana clone 8 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_179967.2	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:131   UUCAGUUUCCAGUGGGUCGUA   151 Target Full Sequence	1.5	Arabidopsis thaliana histone H2A 8 (HTA8), mRNA	histone H2A 8(HTA8)	coding protein	psRNATarget
AK220868.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:131   UUCAGUUUCCAGUGGGUCGUA   151 Target Full Sequence	1.5	Arabidopsis thaliana mRNA for histone H2A, complete cds, clone: RAFL22-42-E22	NA	coding protein	psRNATarget
AK228272.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:131   UUCAGUUUCCAGUGGGUCGUA   151 Target Full Sequence	1.5	Arabidopsis thaliana mRNA for histone H2A, complete cds, clone: RAFL14-72-G22	NA	coding protein	psRNATarget
BX821514.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:117   UUCAGUUUCCAGUGGGUCGUA   137 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX821413.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:115   UUCAGUUUCCAGUGGGUCGUA   135 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL3ZE05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT026423.1	ncRNA:21   AAGUCAAAGGUCACCGAGCAU   1   |||||||||||||||*||||| targets:110   UUCAGUUUCCAGUGGGUCGUA   130 Target Full Sequence	1.5	Arabidopsis thaliana At2g38810 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"; Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC; Plant Cell. 22:1074-1089(2010).