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BaseInfo

ncRNA ID	novel_osa_miR318
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:32211057-32211115 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1742988;SRR2040388;SRR2040393;SRR2040400;SRR3123653;SRR1738219
Length	24
Mature sequence(if miRNA)	1 - AAAGUUGGAAUCUAAACAGGGCCU - 24
Stem-loop(if miRNA)	-      -    U      A     UUACU  AAAGUU GGAA CUAAAC GGGCC     U  |||||| |||| |||||| |||||  UUUCAA CCUU GAUUUG UCCGG     A U      U    -      G     UAGUC
Stem-loop sequence	AAAGUUGGAAUCUAAACAGGGCCUUACUUACUGAUGGCCUGGUUUAGUUCCUAACUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT832526.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   ||||||||||||||||=||||||| targets:2307   AGGCCCUGUUUAGAUUUCAACUUU   2330 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207C12, full insert sequence	NA	coding protein	psRNATarget
AK070316.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   ||||||||||||||||=||||||| targets:2363   AGGCCCUGUUUAGAUUUCAACUUU   2386 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023052A16, full insert sequence	NA	coding protein	psRNATarget
XM_015787504.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   ||||||||||||||||=||||||| targets:2336   AGGCCCUGUUUAGAUUUCAACUUU   2359 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protease 2 (LOC4342148), transcript variant X2, mRNA	protease 2(LOC4342148)	coding protein	psRNATarget
XM_015787503.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   ||||||||||||||||=||||||| targets:2363   AGGCCCUGUUUAGAUUUCAACUUU   2386 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protease 2 (LOC4342148), transcript variant X1, mRNA	protease 2(LOC4342148)	coding protein	psRNATarget
AK287623.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   *||||||||||||||||||||||| targets:2140   UGGCCCUGUUUAGAUUCCAACUUU   2163 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065068F15, full insert sequence	NA	coding protein	psRNATarget
AK288361.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   |||||=||||||||||=||||||| targets:3271   AGGCCUUGUUUAGAUUUCAACUUU   3294 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence	NA	coding protein	psRNATarget
XM_015767117.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   ||||||*||||||||||||||||| targets:1072   AGGCCCCGUUUAGAUUCCAACUUU   1095 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266427 (LOC9266427), transcript variant X8, mRNA	uncharacterized LOC9266427(LOC9266427)	coding protein	psRNATarget
AK109636.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   ||*||||||||||||||||||||| targets:856   AGUCCCUGUUUAGAUUCCAACUUU   879 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-138-D11, full insert sequence	NA	coding protein	psRNATarget
XM_015760156.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   |||||*|||||||||||||||||| targets:2140   AGGCCAUGUUUAGAUUCCAACUUU   2163 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group laccase-19 (LOC4351005), mRNA	laccase-19(LOC4351005)	coding protein	psRNATarget
XM_015790018.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   |||||*||||||||||=||||||| targets:897   AGGCCGUGUUUAGAUUUCAACUUU   920 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome c6, chloroplastic (LOC4343634), mRNA	cytochrome c6, chloroplastic(LOC4343634)	coding protein	psRNATarget
CT834578.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   |||||*||||||||||=||||||| targets:795   AGGCCGUGUUUAGAUUUCAACUUU   818 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN022I08, full insert sequence	NA	coding protein	psRNATarget
AK068245.1	ncRNA:24   UCCGGGACAAAUCUAAGGUUGAAA   1   |||||*||||||||||=||||||| targets:813   AGGCCGUGUUUAGAUUUCAACUUU   836 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013140D13, full insert sequence	NA	coding protein	psRNATarget