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BaseInfo

ncRNA ID	novel_osa_miR291
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:27593800-27593991 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1849773;SRR1849774;SRR1849784;SRR3123653
Length	23
Mature sequence(if miRNA)	1 - AAACGUAGAUUACUGACAAAACA - 23
Stem-loop(if miRNA)	--                      A            C                                             A   A  GGAUGA   AAACGUAGAUUACUGACAAAAC CAUUUCAUAAUC CUAGGCUAUUUUGCGAGACGAAUCUAACGAGGUAUAUUAAUCCAU AUU GC      U   |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||   UUUGCAUCUAAUGGCUGUUUUG GUAAGGUAUUGG GAUCCGAUAAAACGCUCUGCUUAGAUUGCUCUAUAUAAUUAGGUA UAA CG      U AA                      G            A                                             C   A  AUGUCA
Stem-loop sequence	AAACGUAGAUUACUGACAAAACACAUUUCAUAAUCCCUAGGCUAUUUUGCGAGACGAAUCUAACGAGGUAUAUUAAUCCAUAAUUAGCGGAUGAUUACUGUAGCAAAUCAUGGAUUAAUAUAUCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGAGGUUAUGGAAUGGGUUUUGUCGGUAAUCUACGUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015766387.1	ncRNA:23   ACAAAACAGUCAUUAGAUGCAAA   1   ||||||||=|*|||||||||||| targets:23   UGUUUUGUUAUUAAUCUACGUUU   45 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
XM_015781418.1	ncRNA:23   ACAAAACAGUCAUUAGAUGCAAA   1   *|||||*|||||||||||=|||| targets:1307   GGUUUUAUCAGUAAUCUAUGUUU   1329 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
XM_015762321.1	ncRNA:23   AC--AAAACAGUCAUUAGAUGCAAA   1   ||--||||*|||||||||||||||| targets:1109   UGAAUUUUAUCAGUAAUCUACGUUU   1133 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK107263.1	ncRNA:23   ACAAAACAGUCAUUAGAUGCAAA   1   *|||||*|||||||||||=|||| targets:1218   GGUUUUAUCAGUAAUCUAUGUUU   1240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:23   ACAAAACAGUCAUUAGAUGCAAA   1   *|||||||*|||||||||=|||| targets:542   AGUUUUGUAAGUAAUCUAUGUUU   564 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget