| ncRNA ID |
novel_osa_miR279 |
| Species |
Oryza sativa |
| Class |
miRNA |
| Genome position |
Chr1:20805538-20805694 [-] |
| Reference genome |
IRGSP-1.0 |
| Source |
SRR1738243;SRR1738244;SRR1742988;SRR1742994;SRR1743002;SRR1743006;SRR1849765;SRR1849766;SRR1849769;SRR1849772;SRR1849773;SRR1849774;SRR1849776;SRR2040380;SRR2040382;SRR2040384;SRR2040385;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040390;SRR2040393;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040405;SRR2040407;SRR2040408;SRR2857728;SRR2857731;SRR2857732;SRR2857733;SRR2857734;SRR2857735;SRR3123630;SRR3123645;SRR3123646;SRR3123648;SRR3123650;SRR3123651;SRR3123653;SRR5049791;SRR5351737;SRR5351739;SRR5351740;SRR1738209;SRR1738225;SRR1738226;SRR1738228;SRR1738235;SRR1738239;SRR1738240;SRR1738241
|
| Length |
24 |
| Mature sequence(if miRNA) |
134 - AAAUUACAGAUUUCGUCAGGAAAC - 157 |
| Stem-loop(if miRNA) |
--A - C C A A AU C - ----A UA
AAUUACA GAUUU GUCAGGAAA UGCGAGAUAAAUUU UUGA CCUAAUUA UCGU AUUAG CAA UGUU A
||||||| ||||| ||||||||| |||||||||||||| |||| |||||||| |||| ||||| ||| ||||
UUAAUGU UUAAA CGGUUCUUU ACGCUCUGUUUAAA AAUU GGAUUAAU GGUA UAAUC GUU ACAA U
UAG G - A A C GU C U GCAUC UG
|
| Stem-loop sequence |
AAAUUACAGAUUUCGUCAGGAAACUGCGAGAUAAAUUUAUUGAACCUAAUUAAUUCGUCAUUAGCAAAUGUUUAAUGUAACACUACGUUGUCUAAUCAUGGUGUAAUUAGGCUUAAAAAAUUUGUCUCGCAAUUUCUUGGCAAAUUGUGUAAUUGAU
|