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BaseInfo

ncRNA ID	novel_osa_miR271
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:10421065-10421225 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR2458631;SRR3123648;SRR3123653;SRR4407954;SRR5049785;SRR1738224;SRR1738235
Length	24
Mature sequence(if miRNA)	1 - AUCAGACUGGGCGACAAAUAGAGG - 24
Stem-loop(if miRNA)	--A       GG         -            A        U    -CUUCUGCUA  AACACCAGGCCCAGGCCCAGG    UCAGACU  GCGACAAAU AGAGGGACCUAA GUGAACUU UUCC          AG                     C    |||||||  ||||||||| |||||||||||| |||||||| ||||          ||                     C    AGUCUGA  UGCUGUUUA UCUCUCUGGAUU CACUUGAA AAGG          CC                     C UAA       GA         A            C        U    CUAAAACUUA  UGUAGGUCUUGAAUCGGGAAA
Stem-loop sequence	AUCAGACUGGGCGACAAAUAGAGGGACCUAAAGUGAACUUUUUCCCUUCUGCUAAGAACACCAGGCCCAGGCCCAGGCCCAAAGGGCUAAGUUCUGGAUGUCCAUUCAAAAUCGGAAUAAGUUCACCUUAGGUCUCUCUAAUUUGUCGUAGAGUCUGAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015780565.1	ncRNA:24   GGAGAUAAACAGCGGGUCAGACUA   1   ||||*||||||||||||||||||| targets:1612   CCUCAAUUUGUCGCCCAGUCUGAU   1635 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At2g27360 (LOC9270889), mRNA	GDSL esterase/lipase At2g27360(LOC9270889)	coding protein	psRNATarget
AK102384.1	ncRNA:24   GGAGAUAAACAGCGGGUCAGACUA   1   ||||*||||||||||||||||||| targets:1407   CCUCAAUUUGUCGCCCAGUCUGAU   1430 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033092C19, full insert sequence	NA	coding protein	psRNATarget
AK059318.1	ncRNA:24   GGAGAUAAACAGCGGGUCAGACUA   1   ||||*||||||||||||||||||| targets:1406   CCUCAAUUUGUCGCCCAGUCUGAU   1429 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-025-H05, full insert sequence	NA	coding protein	psRNATarget
AK288458.1	ncRNA:24   GGAGAUAAACAGCGGGUCAGACUA   1   ||||*|||||||*||||||||||| targets:3482   CCUCAAUUUGUCACCCAGUCUGAU   3505 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
XM_015780229.1	ncRNA:24   GGAGAUAAACAGCGGGUCAGACUA   1   ||||*|*||||||||||||||||| targets:747   CCUCAACUUGUCGCCCAGUCUGAU   770 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277025 (LOC107277025), transcript variant X8, mRNA	uncharacterized LOC107277025(LOC107277025)	coding protein	psRNATarget