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BaseInfo

ncRNA ID novel_osa_miR263
Species Oryza sativa
Class miRNA
Genome position Chr1:21561523-21561584 [+]
Reference genome IRGSP-1.0
Source SRR1738243;SRR3123653
Length 24
Mature sequence(if miRNA) 39 - AGAUUCAUGGUACUAGGAUGUGUC - 62
Stem-loop(if miRNA) --    CU       G           C  A
  UAUA  UUAGUAC AUGAAUCUGGA AU U
  ||||  ||||||| ||||||||||| ||
  GUGU  GAUCAUG UACUUAGACCU UA G
CU    AG       G           A  U
Stem-loop sequence UAUACUUUAGUACGAUGAAUCUGGACAUAUGUAUAUCCAGAUUCAUGGUACUAGGAUGUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404529.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||||=|||||||||=||||||||
targets:15   GACACGUCCUAGUACUAUGAAUCU   38

2.5 Sequence 2654 from Patent EP2074227 NA coding protein psRNATarget
JB164990.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||||=|||||||||=||||||||
targets:15   GACACGUCCUAGUACUAUGAAUCU   38

2.5 Sequence 2654 from Patent EP2559767 NA coding protein psRNATarget
LQ236659.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||||=|||||||||=||||||||
targets:15   GACACGUCCUAGUACUAUGAAUCU   38

2.5 Sequence 2654 from Patent EP2985353 NA coding protein psRNATarget
AK063452.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||=||||||||||=||||||||
targets:115   GACAUAUCCUAGUACUAUGAAUCU   138

1.5 Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence NA coding protein psRNATarget
AK107495.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||=||=|||||||=||||||||
targets:926   GACAUAUUCUAGUACUAUGAAUCU   949

2.5 Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence NA coding protein psRNATarget
AK119339.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||=||=|||||||=||||||||
targets:306   GACAUAUUCUAGUACUAUGAAUCU   329

2.5 Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence NA coding protein psRNATarget
XM_015770193.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||=||=|||||||=||||||||
targets:1074   GACAUAUUCUAGUACUAUGAAUCU   1097

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA uncharacterized LOC4329136(LOC4329136) coding protein psRNATarget
XM_015758930.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||||=|||||||||*||||||||
targets:1107   GACACGUCCUAGUACAAUGAAUCU   1130

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X4, mRNA uncharacterized LOC4348034(Os10g0130500) coding protein psRNATarget
XM_015758929.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||||=|||||||||*||||||||
targets:1656   GACACGUCCUAGUACAAUGAAUCU   1679

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X3, mRNA uncharacterized LOC4348034(Os10g0130500) coding protein psRNATarget
AK120243.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||||=|||||||||*||||||||
targets:6277   GACACGUCCUAGUACAAUGAAUCU   6300

2.5 Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence NA coding protein psRNATarget
HI403967.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  *||||||||||||||*||||||||
targets:21   AACACAUCCUAGUACAAUGAAUCU   44

1.5 Sequence 2092 from Patent EP2074227 NA coding protein psRNATarget
LQ236097.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  *||||||||||||||*||||||||
targets:21   AACACAUCCUAGUACAAUGAAUCU   44

1.5 Sequence 2092 from Patent EP2985353 NA coding protein psRNATarget
JB164428.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  *||||||||||||||*||||||||
targets:21   AACACAUCCUAGUACAAUGAAUCU   44

1.5 Sequence 2092 from Patent EP2559767 NA coding protein psRNATarget
AK242632.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||=||=|||||||*||||||||
targets:321   GACAUAUUCUAGUACGAUGAAUCU   344

2.5 Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence NA coding protein psRNATarget
LQ236420.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||||||*||||||*||||||||
targets:18   GACACAUCAUAGUACAAUGAAUCU   41

2.5 Sequence 2415 from Patent EP2985353 NA coding protein psRNATarget
HI404290.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||||||*||||||*||||||||
targets:18   GACACAUCAUAGUACAAUGAAUCU   41

2.5 Sequence 2415 from Patent EP2074227 NA coding protein psRNATarget
JB164751.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  ||||||||*||||||*||||||||
targets:18   GACACAUCAUAGUACAAUGAAUCU   41

2.5 Sequence 2415 from Patent EP2559767 NA coding protein psRNATarget
XM_015782022.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  *|||=||||*|||||*||||||||
targets:1311   AACAUAUCCAAGUACAAUGAAUCU   1334

2.5 PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA zinc transporter 9(LOC4339080) coding protein psRNATarget
XM_015782023.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  *|||=||||*|||||*||||||||
targets:2353   AACAUAUCCAAGUACAAUGAAUCU   2376

2.5 PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA zinc transporter 9(LOC4339080) coding protein psRNATarget
XM_015792922.1
ncRNA:24   CUGUGUAGGAUCAUGGUACUUAGA   1
  |||-|*|||||||||*||||||||
targets:2566   GAC-CCUCCUAGUACAAUGAAUCU   2588

2.5 PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase setd3 (LOC4345051), mRNA histone-lysine N-methyltransferase setd3(LOC4345051) coding protein psRNATarget
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