Search result

BaseInfo

ncRNA ID	novel_osa_miR258
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:20011782-20011952 [-]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1738244;SRR1743006;SRR1849770;SRR2040392;SRR2040393;SRR2040400;SRR2040403;SRR2040404;SRR2040408;SRR2040410;SRR2040411;SRR2857732;SRR3123646;SRR3123653;SRR1738228
Length	22
Mature sequence(if miRNA)	150 - UUUUUAUUUGUAACGUUUGACC - 171
Stem-loop(if miRNA)	--           -AAC      C    C        U      -------------UUAA   AAAUAUAAAAAAAGAUAAGUCAUAUGUA   UUUUUAUUUGU    GUUUGA CAUU GUUUUAUU AAAAAA                 UGC                            A   |||||||||||    |||||| |||| |||||||| ||||||                 |||                            A   AAAAAUAAACA    CAAAUU GUAA CAGAAUAA UUUUUU                 AAC                            G UC           GUUA      A    A        U      UACUUAAUAAUAAAUAA   AAACAGUUAACGAAAUAAUAGUUUUCAU
Stem-loop sequence	UUUUUAUUUGUAACGUUUGACCAUUCGUUUUAUUUAAAAAAUUAAUGCAAAUAUAAAAAAAGAUAAGUCAUAUGUAAAGUACUUUUGAUAAUAAAGCAAUUGACAAACAAAAUAAAUAAUAAUUCAUUUUUUUUAAUAAGACAAAUGAUUAAACAUUGACAAAUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403666.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
JB164127.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
HI404009.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236139.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2985353	NA	coding protein	psRNATarget
JB164470.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
JB164189.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
HI403728.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
CT831424.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:719   GGUCAAACGUUACAAACAAAAA   740 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK107988.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:721   GGUCAAACGUUACAAACAAAAA   742 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:759   GGUCAAACGUUACAAACAAAAA   780 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
AK109584.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||*||||||||||||| targets:1116   GGUCAAACAUUACAAAUAAAAA   1137 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015780608.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:1787   GGUCAAACGUUACAAACAAAAA   1808 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK288465.1	ncRNA:22   CCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||*||||| targets:830   GGUCAAACGUUACAAACAAAAA   851 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget