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BaseInfo

ncRNA ID	novel_osa_miR243
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:17874137-17874305 [+]
Reference genome	IRGSP-1.0
Source	SRR1738243;SRR1738244;SRR1849765;SRR1849770;SRR1849773;SRR1849774;SRR1849775;SRR2040382;SRR2040383;SRR2040389;SRR2040390;SRR2040394;SRR2040395;SRR2040399;SRR2040401;SRR2040404;SRR2040405;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR2857730;SRR2857732;SRR2857733;SRR2857735;SRR3123650;SRR3123651;SRR3123652;SRR3123653;SRR5049786;SRR5049791;SRR5351739;SRR1738210;SRR1738239;SRR1738240;SRR1738242
Length	22
Mature sequence(if miRNA)	1 - UUUUUUGACAAACGUUUGACCU - 22
Stem-loop(if miRNA)	--         A           U                AA    A   U     -UU  U  -UA     A     UUUAU      UUUUUUGAC AACGUUUGACC UUUGUCUUAUUUAAAA  UUAU UAA UAUAA   UA UU   UUAUG CUUGA     CAUC   ||||||||| ||||||||||| ||||||||||||||||  |||| ||| |||||   || ||   ||||| |||||     |||A   GAAAAAUUG UUGCAAACUGG GAGCAGAAUAAGUUUU  AAUA AUU AUAUU   AU AA   AGUAC GAAUU     GUAA CU         G           U                AA    C   U     UUU  C  UAC     -     -UCUU
Stem-loop sequence	UUUUUUGACAAACGUUUGACCUUUUGUCUUAUUUAAAAAAUUAUAUAAUUAUAAUUUAUUUUAUUAUGACUUGAUUUAUCAUCAAAUGUUCUUUAAGCAUGACAUAACUAUUUUUAUAUUUACAUAAAAUUUUGAAUAAGACGAGUGGUCAAACGUUGGUUAAAAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   |||||||||||||||||||||= targets:1133   AGGUCAAACGUUUGUCAAAAAG   1154 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
AK288703.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   ||*|||||=||||||||||||= targets:3206   AGAUCAAAUGUUUGUCAAAAAG   3227 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   *|||||||||||*||||||||= targets:1443   UGGUCAAACGUUGGUCAAAAAG   1464 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   *|||||||||||*||||||||= targets:1443   UGGUCAAACGUUGGUCAAAAAG   1464 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
HI404014.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   **||||||||||*||||||||= targets:177   UAGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
JB164475.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   **||||||||||*||||||||= targets:177   UAGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   **||||||||||*||||||||= targets:177   UAGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
AK068361.1	ncRNA:22   UCCAGUUUGCAAACAGUUUUUU   1   **|||||||||||*|||||||= targets:743   UAGUCAAACGUUUAUCAAAAAG   764 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget