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BaseInfo

ncRNA ID	novel_osa_miR242
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:18804925-18805007 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR3123652
Length	21
Mature sequence(if miRNA)	63 - AUCGGAAAUGAUUUGGUACCG - 83
Stem-loop(if miRNA)	--A                               AAUACCC    UACUAAAUUAUUUCUGAUCGUUGGAUCUAAC       A    |||||||||||||||||||||||||||||||       U    AUGGUUUAGUAAAGGCUAGCAAUCUAGAUUG       C GCC                               AUCCGUU
Stem-loop sequence	AUACUAAAUUAUUUCUGAUCGUUGGAUCUAACAAUACCCAUCUUGCCUAGUUAGAUCUAACGAUCGGAAAUGAUUUGGUACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288876.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||=|||||||||=|||| targets:236   CGGUACUAAAUCAUUUUCGAU   256 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078P15, full insert sequence	NA	coding protein	psRNATarget
LQ236402.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:27   CGGUACCAAAUCGUUUCCGAC   47 Target Full Sequence	2.5	Sequence 2397 from Patent EP2985353	NA	coding protein	psRNATarget
HI404272.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:27   CGGUACCAAAUCGUUUCCGAC   47 Target Full Sequence	2.5	Sequence 2397 from Patent EP2074227	NA	coding protein	psRNATarget
JB164733.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:27   CGGUACCAAAUCGUUUCCGAC   47 Target Full Sequence	2.5	Sequence 2397 from Patent EP2559767	NA	coding protein	psRNATarget
HI404271.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:30   CGGUACCAAAUCGUUUCCGAC   50 Target Full Sequence	2.5	Sequence 2396 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236401.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:30   CGGUACCAAAUCGUUUCCGAC   50 Target Full Sequence	2.5	Sequence 2396 from Patent EP2985353	NA	coding protein	psRNATarget
JB164732.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:30   CGGUACCAAAUCGUUUCCGAC   50 Target Full Sequence	2.5	Sequence 2396 from Patent EP2559767	NA	coding protein	psRNATarget
HI404160.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||||||||*|| targets:14   CGGUACCAAAUCAUUUCCAAU   34 Target Full Sequence	1.5	Sequence 2285 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236290.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||||||||*|| targets:14   CGGUACCAAAUCAUUUCCAAU   34 Target Full Sequence	1.5	Sequence 2285 from Patent EP2985353	NA	coding protein	psRNATarget
JB164621.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||||||||*|| targets:14   CGGUACCAAAUCAUUUCCAAU   34 Target Full Sequence	1.5	Sequence 2285 from Patent EP2559767	NA	coding protein	psRNATarget
JB164620.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||||||||*|| targets:27   CGGUACCAAAUCAUUUCCAAU   47 Target Full Sequence	1.5	Sequence 2284 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236289.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||||||||*|| targets:27   CGGUACCAAAUCAUUUCCAAU   47 Target Full Sequence	1.5	Sequence 2284 from Patent EP2985353	NA	coding protein	psRNATarget
HI404159.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||||||||*|| targets:27   CGGUACCAAAUCAUUUCCAAU   47 Target Full Sequence	1.5	Sequence 2284 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015756307.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   ||||||||||||=|||||||* targets:960   CGGUACCAAAUCGUUUCCGAC   980 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group purine permease 3 (LOC4347321), transcript variant X2, mRNA	purine permease 3(LOC4347321)	coding protein	psRNATarget
LQ236668.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   |*|||||=||||=|||||||| targets:37   CAGUACCGAAUCGUUUCCGAU   57 Target Full Sequence	2.5	Sequence 2663 from Patent EP2985353	NA	coding protein	psRNATarget
HI404538.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   |*|||||=||||=|||||||| targets:37   CAGUACCGAAUCGUUUCCGAU   57 Target Full Sequence	2.5	Sequence 2663 from Patent EP2074227	NA	coding protein	psRNATarget
JB164999.1	ncRNA:21   GCCAUGGUUUAGUAAAGGCUA   1   |*|||||=||||=|||||||| targets:37   CAGUACCGAAUCGUUUCCGAU   57 Target Full Sequence	2.5	Sequence 2663 from Patent EP2559767	NA	coding protein	psRNATarget