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BaseInfo

ncRNA ID	novel_osa_miR239
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5832355-5832408 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR3123652;SRR3123653
Length	24
Mature sequence(if miRNA)	31 - GAUCGAUCGCCCAUUAGGGCUGCC - 54
Stem-loop(if miRNA)	--  U        C         G  C   GA CGAUCGCC AUUAGGGCU CC G   || |||||||| ||||||||| ||   CU GCUAGCGG UAAUCCCGG GG A CG  C        A         G  G
Stem-loop sequence	GAUCGAUCGCCCAUUAGGGCUGCCCGAGGGGGGCCCUAAUAGGCGAUCGCUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288572.1	ncRNA:24   CCGUCGGGAUUACCCGCUAGCUAG   1   ||*=|||=|||||||||||=|||| targets:6061   GGGGGCCUUAAUGGGCGAUUGAUC   6084 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090048G20, full insert sequence	NA	coding protein	psRNATarget
AK288182.1	ncRNA:24   CCGU-CG-GGAUUACCCGCUAGCUAG   1   |||=-|=-|||||||||||||||||| targets:116   GGCGUGUGCCUAAUGGGCGAUCGAUC   141 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
AK287768.1	ncRNA:24   CCGUCGGGAUUACCCGCUAGCUAG   1   |**||=|||||*|||||||||||| targets:1738   GAAAGUCCUAACGGGCGAUCGAUC   1761 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065165O14, full insert sequence	NA	coding protein	psRNATarget
XM_015788167.1	ncRNA:24   CCGUCGGGAUUACCCGCUAGCUAG   1   |**|*=||||||*||||||||||| targets:937   GAAAAUCCUAAUCGGCGAUCGAUC   960 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341503 (LOC4341503), transcript variant X2, mRNA	uncharacterized LOC4341503(Os06g0610300)	coding protein	psRNATarget