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BaseInfo

ncRNA ID	novel_osa_miR237
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:28211129-28211199 [+]
Reference genome	IRGSP-1.0
Source	SRR1460508
Length	24
Mature sequence(if miRNA)	48 - UGGUUGGUAUUACCAACCGGGACU - 71
Stem-loop(if miRNA)	--            U                  UU   UCCCGGUUGGUA UACCAACCGGGACUAAAG  A   |||||||||||| ||||||||||||||||||  C   AGGGCCAACCAU AUGGUUGGUCCUGAUUUC  G UC            U                  UA
Stem-loop sequence	UCCCGGUUGGUAUUACCAACCGGGACUAAAGUUACGAUCUUUAGUCCUGGUUGGUAUUACCAACCGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK061057.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   ||||==|||||||||||||||||= targets:360   AGUCUUGGUUGGUAAUACCAACCG   383 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   UC--AGGGCCAACCAUUAUGGUUGGU   1   ||--||=|||||||||*||||||||| targets:400   AGACUCUCGGUUGGUAUUACCAACCA   425 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||||||||||||||*|||||||| targets:1707   AGUCCCGGUUGGUAACACCAACCA   1730 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   ||||||||||||||*||||||||| targets:1915   AGUCCCGGUUGGUAUUACCAACCA   1938 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||||||||||||||*|||||||= targets:665   AGUCCCGGUUGGUAACACCAACCG   688 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||||||||||||||*|||||||= targets:245   AGUCCCGGUUGGUAACACCAACCG   268 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   ||*||||||||||||||||||||= targets:1376   AGCCCCGGUUGGUAAUACCAACCG   1399 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||||||||||||||*|||||||= targets:1850   AGUCCCGGUUGGUAACACCAACCG   1873 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288624.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||||=|||||||||*|||||||| targets:5003   AGUCCUGGUUGGUAACACCAACCA   5026 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||||||||||||||*|||||||= targets:54   AGUCCCGGUUGGUAACACCAACCG   77 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK099726.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||*||||||||||=||||||||= targets:1099   AGUACCGGUUGGUAGUACCAACCG   1122 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence	NA	coding protein	psRNATarget
AK121472.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   |||=|||||||||||*|||||||= targets:2067   AGUUCCGGUUGGUAACACCAACCG   2090 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence	NA	coding protein	psRNATarget
JB164979.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   **|=||||||||||||||||||== targets:2   UAUUCCGGUUGGUAAUACCAACUG   25 Target Full Sequence	2.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   **|=||||||||||||||||||== targets:2   UAUUCCGGUUGGUAAUACCAACUG   25 Target Full Sequence	2.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
HI404518.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   **|=||||||||||||||||||== targets:2   UAUUCCGGUUGGUAAUACCAACUG   25 Target Full Sequence	2.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCAGGGCCAACCAUUAUGGUUGGU   1   ||*||||||||||||*|||||||= targets:1318   AGCCCCGGUUGGUAACACCAACCG   1341 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget