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BaseInfo

ncRNA ID	novel_osa_miR234
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:7413088-7413247 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1743006;SRR3123652
Length	21
Mature sequence(if miRNA)	140 - UUUCCGUGUUCAACUUUGAUC - 160
Stem-loop(if miRNA)	--UUUC     UC  C                    AA        -A    UAUAAGUCACACAUAAAGUACUAUUUACG       CGUGU  AA UUUGAUCGUCCGUCUUAUUU  AAAAUUUU  GAAA                             U       |||||  || ||||||||||||||||||||  ||||||||  ||||       GCACA  UU AAACUAGCAGGCAGAAUAAA  UUUUGAAA  UAUU                             U UUAAAA     GA  A                    -C        AA    AAUCAUAAAAAUAACAAUACUCUACUAUU
Stem-loop sequence	UUUCCGUGUUCAACUUUGAUCGUCCGUCUUAUUUAAAAAAUUUUAGAAAUAUAAGUCACACAUAAAGUACUAUUUACGUUUUAUCAUCUCAUAACAAUAAAAAUACUAAUUAUAAAAAGUUUUCAAAUAAGACGGACGAUCAAAAUUAGACACGAAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK071908.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   |=||||||||||||=|||||| targets:873   GGUCAAAGUUGAACGCGGAAA   893 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013060N22, full insert sequence	NA	coding protein	psRNATarget
JB164256.1	ncRNA:21   CUAGUUU-CAACUUGUGCCUUU   1   |=|=|||-|||||||||||||| targets:150   GGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:21   CUAGUUU-CAACUUGUGCCUUU   1   |=|=|||-|||||||||||||| targets:150   GGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
HI403795.1	ncRNA:21   CUAGUUU-CAACUUGUGCCUUU   1   |=|=|||-|||||||||||||| targets:150   GGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
AK288762.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   |||||||*|||=||||||||| targets:1055   GAUCAAAAUUGGACACGGAAA   1075 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:327   AGUCAAAAUUGGACACGGAAA   347 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015791114.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:4111   AGUCAAAAUUGGACACGGAAA   4131 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X2, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
XM_015791113.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:4143   AGUCAAAAUUGGACACGGAAA   4163 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X1, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
AK100615.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:4220   AGUCAAAAUUGGACACGGAAA   4240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108B01, full insert sequence	NA	coding protein	psRNATarget