Search result

BaseInfo

ncRNA ID	novel_osa_miR233
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:14010039-14010107 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040387;SRR2040395;SRR2040400;SRR3123652;SRR1460506;SRR1460507
Length	24
Mature sequence(if miRNA)	46 - AGAUUCAACGAUCGGAAAUGAUUU - 69
Stem-loop(if miRNA)	--                         UAC       AUUAUUUCUGAUUGUUGGAUCUAGC   GUAUA   |||||||||||||||||||||||||   ||||A   UAGUAAAGGCUAGCAACUUAGAUUG   CGUGU UU                         UUA
Stem-loop sequence	AUUAUUUCUGAUUGUUGGAUCUAGCUACGUAUAAUGUGCAUUGUUAGAUUCAACGAUCGGAAAUGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108234.1	ncRNA:24   UUUAGUAAAGGCUAGCAACUUAGA   1   ||||||||||=||||||||=|||| targets:453   AAAUCAUUUCUGAUCGUUGGAUCU   476 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
AK288876.1	ncRNA:24   UUUAGUAAAGGCUAGCAACUUAGA   1   |||||||||=|||||||||=|||| targets:243   AAAUCAUUUUCGAUCGUUGGAUCU   266 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078P15, full insert sequence	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   UUUAGUAAAGGCUAGCAACUUAGA   1   ||||==|||||||||||||=|||| targets:663   AAAUUGUUUCCGAUCGUUGGAUCU   686 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK287529.1	ncRNA:24   UUUAGUAAAGGCUAGCAACUUAGA   1   ||||==|||||||||||||=|||| targets:174   AAAUUGUUUCCGAUCGUUGGAUCU   197 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   UUUAGUAAAGGCUAGCAACUUAGA   1   ||||==|||||||||||||=|||| targets:174   AAAUUGUUUCCGAUCGUUGGAUCU   197 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
XM_015790062.1	ncRNA:24   UUUAGUAAAGGCUAGCAACUUAGA   1   *||||=|||||||||*|||||||| targets:2320   CAAUCGUUUCCGAUCAUUGAAUCU   2343 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA	L-type lectin-domain containing receptor kinase IV.1(LOC9268564)	coding protein	psRNATarget