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BaseInfo

ncRNA ID novel_osa_miR229
Species Oryza sativa
Class miRNA
Genome position Chr9:6711928-6711996 [-]
Reference genome IRGSP-1.0
Source SRR1738242;SRR1849775;SRR2040381;SRR2040382;SRR2040383;SRR2040384;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040393;SRR2040395;SRR2040397;SRR2040398;SRR2040399;SRR2040400;SRR2040402;SRR2040403;SRR2040404;SRR2040405;SRR2040408;SRR2040409;SRR2040410;SRR2857729;SRR2857736;SRR3123650;SRR3123652;SRR1738239;SRR1738241
Length 21
Mature sequence(if miRNA) 1 - UCCAACGAUCGGAAAUGAUUU - 21
Stem-loop(if miRNA) --                       ACAA  CC A
  AUCGUUUCCGAUUGUUGGAUCUA    UA  C U
  |||||||||||||||||||||||    ||  | C
  UAGUAAAGGCUAGCAACCUGGAU    AU  G C
UU                       --CG  CU U
Stem-loop sequence AUCGUUUCCGAUUGUUGGAUCUAACAAUACCCAUCCUGUCUAGCUAGGUCCAACGAUCGGAAAUGAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB164791.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||||||||||||||||||
targets:5   AAAUCAUUUCCGAUCGUUGGA   25

0.0 Sequence 2455 from Patent EP2559767 NA coding protein psRNATarget
LQ236460.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||||||||||||||||||
targets:5   AAAUCAUUUCCGAUCGUUGGA   25

0.0 Sequence 2455 from Patent EP2985353 NA coding protein psRNATarget
HI404330.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||||||||||||||||||
targets:5   AAAUCAUUUCCGAUCGUUGGA   25

0.0 Sequence 2455 from Patent EP2074227 NA coding protein psRNATarget
AK108234.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  ||||||||||=||||||||||
targets:453   AAAUCAUUUCUGAUCGUUGGA   473

1.5 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
AK288876.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||||||=|||||||||||
targets:243   AAAUCAUUUUCGAUCGUUGGA   263

1.5 Oryza sativa Japonica Group cDNA, clone: J090078P15, full insert sequence NA coding protein psRNATarget
HI403939.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:21   AAAUCGUUUCUGAUCGUUGGA   41

2.5 Sequence 2064 from Patent EP2074227 NA coding protein psRNATarget
LQ236069.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:21   AAAUCGUUUCUGAUCGUUGGA   41

2.5 Sequence 2064 from Patent EP2985353 NA coding protein psRNATarget
JB164400.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:21   AAAUCGUUUCUGAUCGUUGGA   41

2.5 Sequence 2064 from Patent EP2559767 NA coding protein psRNATarget
HI403982.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:53   AAAUCGUUUCUGAUCGUUGGA   73

2.5 Sequence 2107 from Patent EP2074227 NA coding protein psRNATarget
JB164443.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:53   AAAUCGUUUCUGAUCGUUGGA   73

2.5 Sequence 2107 from Patent EP2559767 NA coding protein psRNATarget
LQ236112.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:53   AAAUCGUUUCUGAUCGUUGGA   73

2.5 Sequence 2107 from Patent EP2985353 NA coding protein psRNATarget
HI404119.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:54   AAAUCGUUUCUGAUCGUUGGA   74

2.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
LQ236249.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:54   AAAUCGUUUCUGAUCGUUGGA   74

2.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
JB164580.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:54   AAAUCGUUUCUGAUCGUUGGA   74

2.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
AK063705.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:527   AAAUCGUUUCUGAUCGUUGGA   547

2.5 Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence NA coding protein psRNATarget
XM_015786123.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  ||||==|||||||||||||||
targets:663   AAAUUGUUUCCGAUCGUUGGA   683

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
EF626940.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:1033   AAAUCGUUUCUGAUCGUUGGA   1053

2.5 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds NA coding protein psRNATarget
XM_015755547.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=||||=||||||||||
targets:1508   AAAUCGUUUCUGAUCGUUGGA   1528

2.5 PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA zinc finger protein WIP2(LOC4347420) coding protein psRNATarget
XM_015779655.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  |||||=|||=|||||||||||
targets:1507   AAAUCGUUUUCGAUCGUUGGA   1527

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
AK287529.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  ||||==|||||||||||||||
targets:174   AAAUUGUUUCCGAUCGUUGGA   194

2.0 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:21   UUUAGUAAAGGCUAGCAACCU   1
  ||||==|||||||||||||||
targets:174   AAAUUGUUUCCGAUCGUUGGA   194

2.0 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
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