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BaseInfo

ncRNA ID	novel_osa_miR228
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:3904512-3904699 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040396;SRR3123652
Length	24
Mature sequence(if miRNA)	165 - AUAGCGGACCAACGAUGUACAAGU - 188
Stem-loop(if miRNA)	--                                                         -                      G    A    AAU   UUGUACAUCGUUGGUCCGCUAUACAAGAGCAUGUCAAUAAGUAUACUGGUUACUUAA GUCAGAUUUAGAAUCGAAAUCA AGUG UGUC   A   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||   C   AACAUGUAGCAACCAGGCGAUAUGUUCUCGUACAGUUAUUCAUAUGACCAAUGAAUU CAGUCUAAGUCUUAGCUUUGGU UCAU ACAG   U UG                                                         U                      -    -    GGU
Stem-loop sequence	UUGUACAUCGUUGGUCCGCUAUACAAGAGCAUGUCAAUAAGUAUACUGGUUACUUAAGUCAGAUUUAGAAUCGAAAUCAGAGUGAUGUCAAUACUUGGGACAUACUUGGUUUCGAUUCUGAAUCUGACUUUAAGUAACCAGUAUACUUAUUGACAUGCUCUUGUAUAGCGGACCAACGAUGUACAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764496.1	ncRNA:24   UGAACAUGUAGCAACCAGGCGAUA   1   |||||||||||||||||||*|||| targets:3434   ACUUGUACAUCGUUGGUCCACUAU   3457 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cleavage and polyadenylation specificity factor subunit 7 (LOC9272305), mRNA	cleavage and polyadenylation specificity factor subunit 7(LOC9272305)	coding protein	psRNATarget
XM_015762976.1	ncRNA:24   UGAACAUGUAGCAACCAGGCGAUA   1   |||||||||||||||||||*|||| targets:1024   ACUUGUACAUCGUUGGUCCACUAU   1047 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disheveled-associated activator of morphogenesis 1 (LOC4351616), mRNA	disheveled-associated activator of morphogenesis 1(LOC4351616)	coding protein	psRNATarget
AK287997.1	ncRNA:24   UGAACAUGUAGCAACCAGGCGAUA   1   |||||||||||||||||||*|||| targets:232   ACUUGUACAUCGUUGGUCCACUAU   255 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075104A17, full insert sequence	NA	coding protein	psRNATarget
XM_015763796.1	ncRNA:24   UGAACAUGUAGCAACCAGGCGAUA   1   ||||||||||=||||||||*|||| targets:567   ACUUGUACAUUGUUGGUCCACUAU   590 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267962 (LOC9267962), mRNA	uncharacterized LOC9267962(LOC9267962)	coding protein	psRNATarget