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BaseInfo

ncRNA ID novel_osa_miR204
Species Oryza sativa
Class miRNA
Genome position Chr8:9483576-9483701 [+]
Reference genome IRGSP-1.0
Source SRR1738242;SRR3123645;SRR3123650;SRR3123651;SRR3123652;SRR1738226;SRR1738239;SRR1738240
Length 24
Mature sequence(if miRNA) 103 - GAUUUUUUAGUACGUGUUUGACCA - 126
Stem-loop(if miRNA) --        UUG             CA C    UACAUUAAAAU           AAAAAGU
  GUCAAACG   AUUAAAAAGUCAA  G GUCA           ACGGAGGGAGU       G
  ||||||||   |||||||||||||  | ||||           |||||||||||
  CAGUUUGU   UGAUUUUUUAGUU  C CAGU           UGCCUCCCUCA       G
AC        GCA             AC A    UUAUAAAACUU           CGAAGGA
Stem-loop sequence GUCAAACGUUGAUUAAAAAGUCAACAGCGUCAUACAUUAAAAUACGGAGGGAGUAAAAAGUGGAGGAAGCACUCCCUCCGUUUCAAAAUAUUUGACACCAUUGAUUUUUUAGUACGUGUUUGACCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243013.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  ||||||||||||||||||||||||
targets:612   UGGUCAAACACGUACUAAAAAAUC   635

0.0 Oryza sativa Japonica Group cDNA, clone: J090098F15, full insert sequence NA coding protein psRNATarget
AK242434.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  ||||||||||=|||||||||||||
targets:511   UGGUCAAACAUGUACUAAAAAAUC   534

1.0 Oryza sativa Japonica Group cDNA, clone: J080093A09, full insert sequence NA coding protein psRNATarget
AK288852.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  |||||||||||||||||||||=||
targets:4241   UGGUCAAACACGUACUAAAAAGUC   4264

1.5 Oryza sativa Japonica Group cDNA, clone: J090075M07, full insert sequence NA coding protein psRNATarget
AK288135.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:553   CGGUCAAACAUGUGCUAAAAAAUC   576

2.5 Oryza sativa Japonica Group cDNA, clone: J080305D01, full insert sequence NA coding protein psRNATarget
XM_015786076.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1620   CGGUCAAACAUGUGCUAAAAAAUC   1643

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X8, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786072.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1669   CGGUCAAACAUGUGCUAAAAAAUC   1692

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X4, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786077.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1745   CGGUCAAACAUGUGCUAAAAAAUC   1768

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X9, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786075.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1752   CGGUCAAACAUGUGCUAAAAAAUC   1775

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X7, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786074.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1752   CGGUCAAACAUGUGCUAAAAAAUC   1775

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X6, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786073.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1756   CGGUCAAACAUGUGCUAAAAAAUC   1779

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X5, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786070.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1762   CGGUCAAACAUGUGCUAAAAAAUC   1785

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X2, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786071.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1873   CGGUCAAACAUGUGCUAAAAAAUC   1896

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X3, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786068.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1900   CGGUCAAACAUGUGCUAAAAAAUC   1923

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X1, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786078.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  *|||||||||=||=||||||||||
targets:1983   CGGUCAAACAUGUGCUAAAAAAUC   2006

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X10, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015790302.1
ncRNA:24   ACCAGUUUGUGCAUGAUUUUUUAG   1
  |*||||||||=||||||||||=||
targets:56   UAGUCAAACAUGUACUAAAAAGUC   79

2.5 PREDICTED: Oryza sativa Japonica Group flavin-containing monooxygenase FMO GS-OX-like 8 (LOC4342236), mRNA flavin-containing monooxygenase FMO GS-OX-like 8(LOC4342236) coding protein psRNATarget
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