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BaseInfo

ncRNA ID	novel_osa_miR176
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:19165587-19165755 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040406;SRR3123652
Length	20
Mature sequence(if miRNA)	150 - UUUUCGACCAACGUUUGACU - 169
Stem-loop(if miRNA)	--UUUUCGAC           U                 UU      ---------------C      GAAAAUAUUUAUGUUAUGCUUAA           CAACGUUUGAC AUUCGUUUUAUUCAAAA  UUUGUG                AAAUAU                       A           ||||||||||| |||||||||||||||||  ||||||                ||||||           GUUGCAAACUG UAAGCAGAAUAAGUUUU  AAAUAC                AUAAUA                       G UGAAAAACAA           U                 UU      AUUAAUAGUAAAUAAA      CUGAACUAAGCAGUAGUUUACAA
Stem-loop sequence	UUUUCGACCAACGUUUGACUAUUCGUUUUAUUCAAAAUUUUUGUGCAAAUAUGAAAAUAUUUAUGUUAUGCUUAAAGAACAUUUGAUGACGAAUCAAGUCAUAAUAAAAUAAAUGAUAAUUACAUAAAUUUUUUGAAUAAGACGAAUUGUCAAACGUUGAACAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792366.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =||||||||||||||||||| targets:846   GGUCAAACGUUGGUCGAAAA   865 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =||||||||||||||||||| targets:854   GGUCAAACGUUGGUCGAAAA   873 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK105698.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =||||||||||||||||||| targets:1260   GGUCAAACGUUGGUCGAAAA   1279 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =||||||||||||||||||= targets:2793   GGUCAAACGUUGGUCGAAAG   2812 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
HI404014.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   |||||||||||||||*|||| targets:178   AGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	1.5	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   |||||||||||||||*|||| targets:178   AGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	1.5	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
JB164475.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   |||||||||||||||*|||| targets:178   AGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	1.5	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =||||||||||||||*|||| targets:1444   GGUCAAACGUUGGUCAAAAA   1463 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =||||||||||||||*|||| targets:1444   GGUCAAACGUUGGUCAAAAA   1463 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015768863.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =|||||||||||*||||||* targets:217   GGUCAAACGUUGUUCGAAAU   236 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA	uncharacterized LOC107279962(LOC107279962)	coding protein	psRNATarget
AK288521.1	ncRNA:20   UCAGUUUGCAACCAGCUUUU   1   =|||||||||||*||||||* targets:223   GGUCAAACGUUGUUCGAAAU   242 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence	NA	coding protein	psRNATarget