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BaseInfo

ncRNA ID	novel_osa_miR161
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13329787-13329989 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738244;SRR1742988;SRR1742989;SRR1742994;SRR1849766;SRR1849767;SRR1849769;SRR1849770;SRR1849776;SRR2040380;SRR2040381;SRR2040383;SRR2040389;SRR2040391;SRR2040393;SRR2040395;SRR2040397;SRR2040399;SRR2040400;SRR2040402;SRR2040405;SRR2040406;SRR2040409;SRR2857734;SRR3123630;SRR3123645;SRR3123651;SRR3123652;SRR3234041;SRR5049779;SRR5049780;SRR5049783;SRR5049785;SRR5049789;SRR5049793;SRR1612403;SRR1738209;SRR1738210;SRR1738211;SRR1738212;SRR1738214;SRR1738216;SRR1738217;SRR1738223;SRR1738224;SRR1738225;SRR1738226;SRR1738227;SRR1738240
Length	23
Mature sequence(if miRNA)	181 - AAAAUAUAUAGAACAUAAGAGUC - 203
Stem-loop(if miRNA)	--         A        C         A U A      CU       UU    C            UC         U          G   ---U    A   CUCUUGUGU UCUAUAUG UUUGUAUGU G C UGUUGG  UACAAUG  AAUA AUUAGUUGUUUC  UCAGUGGUA CAUGGUAUCA AGC    ACUC U   ||||||||| |||||||| ||||||||| | | ||||||  |||||||  |||| ||||||||||||  ||||||||| |||||||||| |||    ||||   GAGAAUACA AGAUAUAU AAACGUACA C G AUAACC  GUGUUAC  UUAU UAGUCAACAAAG  AGUUACCAU GUACCAUGGU UCG    UGAG A CU         -        A         A U C      AG       -U    U            GA         U          G   UUGU    A
Stem-loop sequence	CUCUUGUGUAUCUAUAUGCUUUGUAUGUAGUCAUGUUGGCUUACAAUGUUAAUACAUUAGUUGUUUCUCUCAGUGGUAUCAUGGUAUCAGAGCUACUCAUAAGAGUUGUUGCUGUGGUACCAUGUUACCAUUGAAGGAAACAACUGAUUUAUUUCAUUGUGGACCAAUACGUCAACAUGCAAAAUAUAUAGAACAUAAGAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241757.1	ncRNA:23   CUGAGAAUACAAGAUAUAUAAAA   1   *|=|||||*||||||||||*||| targets:582   CAUUCUUAAGUUCUAUAUAGUUU   604 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065204E20, full insert sequence	NA	coding protein	psRNATarget
AK288436.1	ncRNA:23   CUGAGAAUACAAGAUAUAUAAAA   1   *|*||*|=||||||||||||||* targets:468   CAAUCAUGUGUUCUAUAUAUUUC   490 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090033P03, full insert sequence	NA	coding protein	psRNATarget
XM_015761350.1	ncRNA:23   CUGAGAAUACAAGAUAUAUAAAA   1   *|*||*|=||||||||||||||* targets:2738   CAAUCAUGUGUUCUAUAUAUUUC   2760 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g71060, mitochondrial (LOC4324492), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g71060, mitochondrial(LOC4324492)	coding protein	psRNATarget
XM_015761365.1	ncRNA:23   CUGAGAAUACAAGAUAUAUAAAA   1   *|*||*|=||||||||||||||* targets:2734   CAAUCAUGUGUUCUAUAUAUUUC   2756 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g71060, mitochondrial (LOC4324492), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At1g71060, mitochondrial(LOC4324492)	coding protein	psRNATarget
XM_015761359.1	ncRNA:23   CUGAGAAUACAAGAUAUAUAAAA   1   *|*||*|=||||||||||||||* targets:2408   CAAUCAUGUGUUCUAUAUAUUUC   2430 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g71060, mitochondrial (LOC4324492), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g71060, mitochondrial(LOC4324492)	coding protein	psRNATarget