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BaseInfo

ncRNA ID	novel_osa_miR160
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:6162719-6162882 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738244;SRR1743000;SRR1743002;SRR1743006;SRR1849765;SRR1849771;SRR1849773;SRR1849774;SRR2040385;SRR2040386;SRR2040387;SRR2040389;SRR2040390;SRR2040391;SRR2040392;SRR2040393;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040400;SRR2040402;SRR2040403;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040411;SRR2857728;SRR2857729;SRR2857731;SRR2857735;SRR3123630;SRR3123651;SRR3123652;SRR1738225;SRR1738240;SRR1738241
Length	21
Mature sequence(if miRNA)	1 - UUUCCGUGUUCAACUUUGAUC - 21
Stem-loop(if miRNA)	--UUUC     UC          A    UU U    UAAAU  UUUUUUAUGAUUAGUUUUUUUUGUUAUUAGAGAUAAAAAA       CGUGU  AACUUUGAUC UCCG  U AUUU     UC                                        G       |||||  |||||||||| ||||  | ||||     ||       GUACA  UUGAAAUUAG AGGU  A UAAA     AA                                        U UCAAAA     CA          C    GG -    -CUUU  AAAAACUUAUUUUUAUUUUUUGUAUUCAGUGUGGAUUUUA
Stem-loop sequence	UUUCCGUGUUCAACUUUGAUCAUCCGUUUUAUUUUAAAUUCUUUUUUAUGAUUAGUUUUUUUUGUUAUUAGAGAUAAAAAAGUAUUUUAGGUGUGACUUAUGUUUUUUAUUUUUAUUCAAAAAAAUUUCAAAUAGGUGGACGAUUAAAGUUACACAUGAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK071908.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   |=||||||||||||=|||||| targets:873   GGUCAAAGUUGAACGCGGAAA   893 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013060N22, full insert sequence	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:21   CUAGUUU-CAACUUGUGCCUUU   1   |=|=|||-|||||||||||||| targets:150   GGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
HI403795.1	ncRNA:21   CUAGUUU-CAACUUGUGCCUUU   1   |=|=|||-|||||||||||||| targets:150   GGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
JB164256.1	ncRNA:21   CUAGUUU-CAACUUGUGCCUUU   1   |=|=|||-|||||||||||||| targets:150   GGUUAAACGUUGAACACGGAAA   171 Target Full Sequence	3.0	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
AK288762.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   |||||||*|||=||||||||| targets:1055   GAUCAAAAUUGGACACGGAAA   1075 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:327   AGUCAAAAUUGGACACGGAAA   347 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015791114.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:4111   AGUCAAAAUUGGACACGGAAA   4131 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X2, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
XM_015791113.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:4143   AGUCAAAAUUGGACACGGAAA   4163 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X1, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
AK100615.1	ncRNA:21   CUAGUUUCAACUUGUGCCUUU   1   *=|||||*|||=||||||||| targets:4220   AGUCAAAAUUGGACACGGAAA   4240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108B01, full insert sequence	NA	coding protein	psRNATarget