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BaseInfo

ncRNA ID novel_osa_miR154
Species Oryza sativa
Class miRNA
Genome position Chr5:12598112-12598326 [-]
Reference genome IRGSP-1.0
Source SRR1738242;SRR1743002;SRR1743006;SRR2040399;SRR2857735;SRR3123630;SRR3123648;SRR3123652;SRR5351737;SRR5351738;SRR1738225;SRR1738227;SRR1738235
Length 24
Mature sequence(if miRNA) 1 - GAAUAUAGGCAAUGCUAGAAAGUC - 24
Stem-loop(if miRNA) ---C             CAC         A        A      U                                         C                   U
    UUUUAGCAUUGCC   AUUCAUAUA AUGUUAAU AAUCUA ACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUA AUAUAUAUAUAUAUAUAUA A
    |||||||||||||   ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
    AAGAUCGUAACGG   UAAGUAUAU UACAAUUA UUAGAU UGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUAU UAUAUAUAUAUAUAUAUAU U
CUGA             AUA         C        C      U                                         A                   A
Stem-loop sequence CUUUUAGCAUUGCCCACAUUCAUAUAAAUGUUAAUAAAUCUAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUACAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUUUAGAUUCAUUAACAUCUAUAUGAAUAUAGGCAAUGCUAGAAAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK318573.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  ||||||||||||||||=|||||||
targets:308   GACUUUCUAGCAUUGCUUAUAUUC   331

1.5 Oryza sativa Japonica Group cDNA, clone: J090044A16, full insert sequence NA coding protein psRNATarget
AK067363.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  ||||||=||||||||=||||||||
targets:965   GACUUUUUAGCAUUGUCUAUAUUC   988

2.5 Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence NA coding protein psRNATarget
CT835788.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  ||||||||||=||||||||||||=
targets:1188   GACUUUCUAGUAUUGCCUAUAUUU   1211

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN020A08, full insert sequence NA coding protein psRNATarget
AK110958.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  |=||||||||||||||=|||||||
targets:499   GGCUUUCUAGCAUUGCUUAUAUUC   522

1.5 Oryza sativa Japonica Group cDNA clone:002-174-A09, full insert sequence NA coding protein psRNATarget
XM_015786027.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  |||*||||||||||||||||||||
targets:4279   GACCUUCUAGCAUUGCCUAUAUUC   4302

0.0 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget
CT836048.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  ||||||||||||||||||||||*|
targets:447   GACUUUCUAGCAUUGCCUAUAUAC   470

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence NA coding protein psRNATarget
XM_015758512.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  |||||||||||||||||||*|||=
targets:1442   GACUUUCUAGCAUUGCCUACAUUU   1465

2.5 PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1-like (LOC107279175), mRNA BTB/POZ and MATH domain-containing protein 1-like(LOC107279175) coding protein psRNATarget
XM_015755953.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  ||=||||||*||||||=|||||||
targets:504   GAUUUUCUAACAUUGCUUAUAUUC   527

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278908 (LOC107278908), mRNA uncharacterized LOC107278908(LOC107278908) coding protein psRNATarget
AK072372.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  *|||||||||||||||*||||||=
targets:679   CACUUUCUAGCAUUGCAUAUAUUU   702

2.5 Oryza sativa Japonica Group cDNA clone:J023068F06, full insert sequence NA coding protein psRNATarget
AK120847.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  *|||||||||||||||*||||||=
targets:524   CACUUUCUAGCAUUGCAUAUAUUU   547

2.5 Oryza sativa Japonica Group cDNA clone:J023023A10, full insert sequence NA coding protein psRNATarget
AK288932.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  |||||||||*|||||||||*||||
targets:2973   GACUUUCUAACAUUGCCUACAUUC   2996

2.5 Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence NA coding protein psRNATarget
AK059715.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  |||||||||*|||||||*||||||
targets:32   GACUUUCUAACAUUGCCCAUAUUC   55

2.5 Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence NA coding protein psRNATarget
AK241705.1
ncRNA:24   CUGAAAGAUCGUAACGGAUAUAAG   1
  |*|*||=|||||||*|||||||||
targets:3981   GUCAUUUUAGCAUUUCCUAUAUUC   4004

2.5 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget