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BaseInfo

ncRNA ID	novel_osa_miR153
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:14139539-14139710 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2857731;SRR3123652;SRR1738237
Length	22
Mature sequence(if miRNA)	1 - UUAAAUUUGAAACAGUUUGACU - 22
Stem-loop(if miRNA)	--     A  C                        C   -U   U        AUAUUA    AUUUUU       A UU    AUU   UCAAA UG UUCAAGUUUGACUAAGUUUAUAGA AAA  AUA UAAUAUUU      CCAA      UUUAUUA A  AAUA   A   ||||| || |||||||||||||||||||||||| |||  ||| ||||||||      ||||      ||||||| |  ||||   AGUUU AC AAGUUUAAAUUGGUUUAAAUAUCU UUU  UAU AUUAUAAA      GGUU      AAAUAAU U  UUAU   A UC     G  A                        U   UU   C        -AACUG    CUAUUU       A UU    AUA
Stem-loop sequence	UCAAAAUGCUUCAAGUUUGACUAAGUUUAUAGACAAAUAUAUUAAUAUUUAUAUUACCAAAUUUUUUUUAUUAAAUUAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUAUCUUGGGUCAAAAAUAUUACUAUUUUUUUUCUAUAAAUUUGGUUAAAUUUGAAACAGUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288358.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   ||||||||||||||||=||||| targets:905   AGUCAAACUGUUUCAAGUUUAA   926 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK065615.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   |||=|||||||||=|||||||| targets:2854   AGUUAAACUGUUUUAAAUUUAA   2875 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   |*||||||||||||||=||||| targets:948   AUUCAAACUGUUUCAAGUUUAA   969 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK243096.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   |||||||=||||||||*||||| targets:1835   AGUCAAAUUGUUUCAAUUUUAA   1856 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100024A13, full insert sequence	NA	coding protein	psRNATarget
XM_015756152.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   |||||||=||||||||*||||| targets:1806   AGUCAAAUUGUUUCAAUUUUAA   1827 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic blue protein (LOC4347927), mRNA	basic blue protein(LOC4347927)	coding protein	psRNATarget
AK242901.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   ||*|||||||||||||=||||| targets:1278   AGACAAACUGUUUCAAGUUUAA   1299 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence	NA	coding protein	psRNATarget
XM_015788305.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   ||*|||||||||||||=||||| targets:1328   AGACAAACUGUUUCAAGUUUAA   1349 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4340210)	coding protein	psRNATarget
AK288873.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   |*|||||=|||||=|||||||| targets:7118   ACUCAAAUUGUUUUAAAUUUAA   7139 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:22   UCAGUUUGACAAAGUUUAAAUU   1   |*|=||||||*||||||||||| targets:2069   ACUUAAACUGCUUCAAAUUUAA   2090 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget