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BaseInfo

ncRNA ID	novel_osa_miR149
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:23233872-23234046 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1742991;SRR2040383;SRR2040390;SRR2040392;SRR3123652
Length	24
Mature sequence(if miRNA)	152 - GAUUUCCGUGUCCAACGUUUGACU - 175
Stem-loop(if miRNA)	-GA                                 A     ----------------UUUUUU  UAAUUAGUAUUUUCAUUGUUGUUAGAUGA    UUUCCGUGUCCAACGUUUGACUGUCCGUCUUAU UGAAA                      UA                             U    ||||||||||||||||||||||||||||||||| |||||                      ||    AAAGGCACAGGUUGCAAACUGGCAGGCAGAAUA ACUUU                      CU                             A CUC                                 A     UUUUAUACUUUUUUUAAUUUUU  GUUCAGUGCGUAUUUCAUAAUUAGUACAA
Stem-loop sequence	GAUUUCCGUGUCCAACGUUUGACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAACAUGAUUAAUACUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUCAUAUUUUUUUCAAAUAAGACGGACGGUCAAACGUUGGACACGGAAACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT827968.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =||||||||||||||||||||||| targets:469   GGUCAAACGUUGGACACGGAAAUC   492 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
XM_015759207.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =||||||||||||||||||||||| targets:60   GGUCAAACGUUGGACACGGAAAUC   83 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
AK288706.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   |||||||||||||=|||||||||= targets:2719   AGUCAAACGUUGGGCACGGAAAUU   2742 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =|||||||||||||||||*||||| targets:3079   GGUCAAACGUUGGACACGAAAAUC   3102 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
AK068180.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   ||*||||||||||||||||||||| targets:460   AGACAAACGUUGGACACGGAAAUC   483 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013135E14, full insert sequence	NA	coding protein	psRNATarget
AK288264.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =||||||||||||=|||||||||= targets:101   GGUCAAACGUUGGGCACGGAAAUU   124 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090016E18, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =|||||||||||||||||||||*| targets:1253   GGUCAAACGUUGGACACGGAAACC   1276 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
XM_015787694.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =|||||||||||||||||||||*| targets:1499   GGUCAAACGUUGGACACGGAAACC   1522 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
AK071262.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =|||||||||||||||||||||*| targets:1381   GGUCAAACGUUGGACACGGAAACC   1404 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
AK066050.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   ||||||||*|||||*||||||||| targets:712   AGUCAAACAUUGGAAACGGAAAUC   735 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013050F13, full insert sequence	NA	coding protein	psRNATarget
XM_015773455.1	ncRNA:20   UUUGCAACCUGUGCCUUUAG   1   ||||||||||||||||||*| targets:1   AAACGUUGGACACGGAAACC   20 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268354 (LOC9268354), mRNA	uncharacterized LOC9268354(LOC9268354)	coding protein	psRNATarget
AK072389.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =**||=*||||||||||||||||= targets:2058   GAACAGUCGUUGGACACGGAAAUU   2081 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023075F19, full insert sequence	NA	coding protein	psRNATarget
XM_015778539.1	ncRNA:24   UCAGUUUGCAACCUGUGCCUUUAG   1   =**||=*||||||||||||||||= targets:2093   GAACAGUCGUUGGACACGGAAAUU   2116 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative metallophosphoesterase At3g03305 (LOC4324960), mRNA	putative metallophosphoesterase At3g03305(LOC4324960)	coding protein	psRNATarget