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BaseInfo

ncRNA ID	novel_osa_miR147
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:23346725-23346887 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040390;SRR2040396;SRR2040397;SRR2040410;SRR3123652
Length	20
Mature sequence(if miRNA)	144 - UUUUUAACCAAUGUUUGACU - 163
Stem-loop(if miRNA)	--      AC                A       C  UUU   U     A   G AAAUA     -     -----GC     G   UUUUUA  CAAUGUUUGACUAUUC UUUUAUU AA   UUU UGUAA UAU A     UUUAU GUCAU       UUAAA A   ||||||  |||||||||||||||| ||||||| ||   ||| ||||| ||| |     ||||| |||||       ||||| A   AAAAAU  GUUGUAAACUGGUAAG AGAAUAA UU   AAA ACAUU AUA U     AAAUA CAGUG       AAUUU C UG      AA                C       U  UUU   U     A   G AAAGA     A     AAGUAAU     A
Stem-loop sequence	UUUUUAACCAAUGUUUGACUAUUCAUUUUAUUCAAUUUUUUUUGUAAAUAUGAAAAUAUUUAUGUCAUGCUUAAAGAACAUUUAAUAAUGAAGUGACAAUAAAAGAAAUGAUAAUUACAUAAAUUUUUUAAUAAGACGAAUGGUCAAAUGUUGAAUAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288901.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||||||||||||||||||| targets:451   GGUCAAACAUUGGUUAAAAA   470 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090080K21, full insert sequence	NA	coding protein	psRNATarget
AK288883.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||=||||=||||||||||| targets:1073   GGUUAAACGUUGGUUAAAAA   1092 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget
JB163965.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =|||||||||||*||||||| targets:173   GGUCAAACAUUGAUUAAAAA   192 Target Full Sequence	1.5	Sequence 1629 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235634.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =|||||||||||*||||||| targets:173   GGUCAAACAUUGAUUAAAAA   192 Target Full Sequence	1.5	Sequence 1629 from Patent EP2985353	NA	coding protein	psRNATarget
HI403504.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =|||||||||||*||||||| targets:173   GGUCAAACAUUGAUUAAAAA   192 Target Full Sequence	1.5	Sequence 1629 from Patent EP2074227	NA	coding protein	psRNATarget
CT834259.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =*||||||=||||||||||| targets:839   GAUCAAACGUUGGUUAAAAA   858 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =*||||||=||||||||||| targets:1483   GAUCAAACGUUGGUUAAAAA   1502 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =*||||||=||||||||||| targets:1625   GAUCAAACGUUGGUUAAAAA   1644 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK066278.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||*|||||||||*|||||| targets:1174   GGUGAAACAUUGGAUAAAAA   1193 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013062H12, full insert sequence	NA	coding protein	psRNATarget
AK072334.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||*|||||||||*|||||| targets:1300   GGUGAAACAUUGGAUAAAAA   1319 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023044C15, full insert sequence	NA	coding protein	psRNATarget
XM_015756031.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||*|||||||||*|||||| targets:1272   GGUGAAACAUUGGAUAAAAA   1291 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 2b (LOC4346696), mRNA	endoribonuclease Dicer homolog 2b(LOC4346696)	coding protein	psRNATarget
XM_015774817.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||*|||||||||*|||||| targets:1168   GGUGAAACAUUGGAUAAAAA   1187 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 2a (LOC4333337), transcript variant X2, mRNA	endoribonuclease Dicer homolog 2a(LOC4333337)	coding protein	psRNATarget
XM_015774816.1	ncRNA:20   UCAGUUUGUAACCAAUUUUU   1   =||*|||||||||*|||||| targets:1294   GGUGAAACAUUGGAUAAAAA   1313 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 2a (LOC4333337), transcript variant X1, mRNA	endoribonuclease Dicer homolog 2a(LOC4333337)	coding protein	psRNATarget