Search result

BaseInfo

ncRNA ID	novel_osa_miR144
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:27492777-27492833 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR1738244;SRR1742988;SRR1742992;SRR1742994;SRR1742996;SRR1743000;SRR1743002;SRR1743006;SRR1849766;SRR1849771;SRR1849773;SRR1849775;SRR2040380;SRR2040382;SRR2040384;SRR2040386;SRR2040387;SRR2040389;SRR2040391;SRR2040392;SRR2040393;SRR2040394;SRR2040397;SRR2040398;SRR2040399;SRR2040400;SRR2040401;SRR2040402;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR2097778;SRR2098557;SRR2099745;SRR2857734;SRR2857735;SRR2857736;SRR3123630;SRR3123645;SRR3123646;SRR3123650;SRR3123652;SRR3123653;SRR5049779;SRR5049786;SRR5049787;SRR5351737;SRR5351738;SRR5351739;SRR5351742;SRR1609316;SRR1738216;SRR1738225;SRR1738226;SRR1738227;SRR1738228;SRR1738237;SRR1738239;SRR1738241
Length	24
Mature sequence(if miRNA)	34 - GAAAAUCAUUUUCGCAGGCGGACC - 57
Stem-loop(if miRNA)	--      -C             GACCAC   GAAAAU  AUUUUCGCAGGCG      U   ||||||  |||||||||||||   CUUUUA  UAAAAGCGUCCGC      U CG      AC             AACGAA
Stem-loop sequence	GAAAAUCAUUUUCGCAGGCGGACCACUUAAGCAACGCCUGCGAAAAUCAAUUUUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT827932.1	ncRNA:24   CCAGGCGGACGCUUUUACUAAAAG   1   ||*|||||||=||||||||||||= targets:1761   GGACCGCCUGUGAAAAUGAUUUUU   1784 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108G07, full insert sequence	NA	coding protein	psRNATarget
AK120802.1	ncRNA:24   CCAGGCGGACGCUUUUACUAAAAG   1   ||--||||||=||||||||||||| targets:512   GG--CGCCUGUGAAAAUGAUUUUC   533 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023013A15, full insert sequence	NA	coding protein	psRNATarget
AK288934.1	ncRNA:24   CCAG---GCGGACGCUUUUACUAAAAG   1   *|||---|||||||||||||*|||||= targets:3387   AGUCAACCGCCUGCGAAAAUCAUUUUU   3413 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082I21, full insert sequence	NA	coding protein	psRNATarget
AK107035.1	ncRNA:24   CCAGGCGGACGCUUUUACUAAAAG   1   ||-|||||**|||||||||||||| targets:663   GG-CCGCCAACGAAAAUGAUUUUC   685 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-121-B08, full insert sequence	NA	coding protein	psRNATarget