Search result

BaseInfo

ncRNA ID	novel_osa_miR142
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:3132280-3132348 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738243;SRR1738244;SRR1849769;SRR1849775;SRR2040388;SRR2040409;SRR2857731;SRR3123630;SRR3123651;SRR3123652;SRR3123653;SRR4407775;SRR1738225;SRR1738227;SRR1738237;SRR1738240
Length	24
Mature sequence(if miRNA)	46 - AAUUGGACAUAUGAGACAUCGGGA - 69
Stem-loop(if miRNA)	--  A         U         A   AUAUGA   CC AUGUCUCAU UGUCCAAUU CAC      A   || ||||||||| ||||||||| |||      A   GG UACAGAGUA ACAGGUUAA GUG      A AG  C         U         C   AAAAAA
Stem-loop sequence	CCAAUGUCUCAUUUGUCCAAUUACACAUAUGAAAAAAAAAAGUGCAAUUGGACAUAUGAGACAUCGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK059341.1	ncRNA:24   AG-GGCUACAGAGUAUACAGGUUAA   1   ||-|||||*|||||*|||||||||| targets:221   UCUCCGAUUUCUCAAAUGUCCAAUU   245 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-026-B05, full insert sequence	NA	coding protein	psRNATarget
AY785764.1	ncRNA:24   AGGGCUACAGAGUAUACAGGUUAA   1   **==|||*||*||||||||||||| targets:273   AGUUGAUUUCCCAUAUGUCCAAUU   296 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) clone OS13346 putative polynucleotide adenylyltransferase mRNA, partial cds	NA	coding protein	psRNATarget
AK241138.1	ncRNA:24   AGGGCUACAGAGUAUACAGGUUAA   1   **==|||*||*||||||||||||| targets:730   AGUUGAUUUCCCAUAUGUCCAAUU   753 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065099G09, full insert sequence	NA	coding protein	psRNATarget
XM_015773585.1	ncRNA:24   AGGGCUACAGAGUAUACAGGUUAA   1   **==|||*||*||||||||||||| targets:824   AGUUGAUUUCCCAUAUGUCCAAUU   847 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear poly(A) polymerase 3 (LOC9272301), mRNA	nuclear poly(A) polymerase 3(LOC9272301)	coding protein	psRNATarget
AK287667.1	ncRNA:24   AGGGCUACAGAGUAUACAGGUUAA   1   |***|||||||||||||*|||||* targets:1185   UGGGGAUGUCUCAUAUGGCCAAUG   1208 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065117I11, full insert sequence	NA	coding protein	psRNATarget
XM_015769943.1	ncRNA:24   AGGGCUACAGAGUAUACAGGUUAA   1   |***|||||||||||||*|||||* targets:1184   UGGGGAUGUCUCAUAUGGCCAAUG   1207 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329647 (LOC4329647), mRNA	uncharacterized LOC4329647(LOC4329647)	coding protein	psRNATarget