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BaseInfo

ncRNA ID ath-miR447b
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:1535426-1535661 [-]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 57 - UUGGGGACGAGAUGUUUUGUUG - 78
Stem-loop(if miRNA)              C        UU    A     U  U      ACA         A            -      UG   --U    UUC    -  GGUGUGUUUUUCUAGCCAGCCC
CAUUCUUAAUAUA AAUACUAC  UUUC UCCAU AA CCCCUU   AUGUCGAGU AACGAAGCAUCU GUCCCC  GUA   UGUC   GAGC UU                      C
||||||||||||| ||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| ||||||  |||   ||||   |||| ||
GUAAGAGUUAUAU UUAUGAUG  AAAG AGGUA UU GGGGAA   UAUAGCUCA UUGUUUUGUAGA CAGGGG  UAU   ACAG   CUUA GU                      A
             A        UU    A     U  C      GAA         G            G      UU   UAC    --U    U  UUGUUACUAGUUGAGCUCUUGA
Stem-loop sequence CAUUCUUAAUAUACAAUACUACUUUUUCAUCCAUUAAUCCCCUUACAAUGUCGAGUAAACGAAGCAUCUGUCCCCUGGUAUUGUCUUCGAGCUUGGUGUGUUUUUCUAGCCAGCCCCAAGUUCUCGAGUUGAUCAUUGUUUGUAUUCUGACACAUUAUUUGGGGACGAGAUGUUUUGUUGACUCGAUAUAAGAAGGGGCUUUAUGGAAGAAAUUGUAGUAUUAUAUAUUGAGAAUG

Reference

1 PMID:15851028
"microRNA-directed phasing during trans-acting siRNA biogenesis in plants";
Allen E, Xie Z, Gustafson AM, Carrington JC;
Cell. 121:207-221(2005).
2 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
4 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).