ncRNA ID | ath-miR447b |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:1535426-1535661 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 57 - UUGGGGACGAGAUGUUUUGUUG - 78 |
Stem-loop(if miRNA) |
             C        UU    A     U  U      ACA         A            -      UG   --U    UUC    -  GGUGUGUUUUUCUAGCCAGCCC CAUUCUUAAUAUA AAUACUAC  UUUC UCCAU AA CCCCUU   AUGUCGAGU AACGAAGCAUCU GUCCCC  GUA   UGUC   GAGC UU                      C ||||||||||||| ||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| ||||||  |||   ||||   |||| || GUAAGAGUUAUAU UUAUGAUG  AAAG AGGUA UU GGGGAA   UAUAGCUCA UUGUUUUGUAGA CAGGGG  UAU   ACAG   CUUA GU                      A              A        UU    A     U  C      GAA         G            G      UU   UAC    --U    U  UUGUUACUAGUUGAGCUCUUGA |
Stem-loop sequence | CAUUCUUAAUAUACAAUACUACUUUUUCAUCCAUUAAUCCCCUUACAAUGUCGAGUAAACGAAGCAUCUGUCCCCUGGUAUUGUCUUCGAGCUUGGUGUGUUUUUCUAGCCAGCCCCAAGUUCUCGAGUUGAUCAUUGUUUGUAUUCUGACACAUUAUUUGGGGACGAGAUGUUUUGUUGACUCGAUAUAAGAAGGGGCUUUAUGGAAGAAAUUGUAGUAUUAUAUAUUGAGAAUG |
1 | PMID:15851028
"microRNA-directed phasing during trans-acting siRNA biogenesis in plants"; Allen E, Xie Z, Gustafson AM, Carrington JC; Cell. 121:207-221(2005). |
2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
4 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |