Search result

BaseInfo

ncRNA ID	novel_osa_miR132
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:18085980-18086118 [-]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738244;SRR1743002;SRR2040384;SRR2040385;SRR2040386;SRR2040390;SRR2040392;SRR2040394;SRR2040396;SRR2040397;SRR2040399;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040409;SRR2040411;SRR2857735;SRR2857736;SRR3123650;SRR3123652;SRR5351737;SRR5351738;SRR1738239
Length	24
Mature sequence(if miRNA)	116 - GAUUCCGUCUGUAAACUGCGAGAC - 139
Stem-loop(if miRNA)	--    C   CU     C              A    U  U    AA     CA    -   AUAUUUAU   AG   GAUU CGU  GUAAA UGCGAGACGAAUUU UUAA CU AAUU  UUCAU  UUUG CAA        UGU  C   |||| |||  ||||| |||||||||||||| |||| || ||||  |||||  |||| |||        |||   CUAA GCA  CAUUU ACGCUCUGUUUAGA AAUU GA UUAA  AGGUA  AAAC GUU        ACA  A GU    A   --     A              A    C  U    CG     CG    U   --------   CC
Stem-loop sequence	GAUUCCGUCUGUAAACUGCGAGACGAAUUUAUUAAUCUUAAUUAAUUCAUCAUUUGCAAAUAUUUAUUGUAGCACCACAUUGUCAAAGCAUGGAGCAAUUUAGCUUAAAAGAUUUGUCUCGCAAUUUACACGAAAUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:805   GUCUCGCAGUUUACAGGCGGAAUC   828 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:1772   GUCUCGCAGUUUACAGGCGGAAUC   1795 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:75   GUCUCGCAGUUUACAGGCGGAAUC   98 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:2048   GUCUCGCAGUUUACAGGCGGAAUC   2071 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   ||||||||||||||||=||||||| targets:75   GUCUCGCAGUUUACAGGCGGAAUC   98 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AK288682.1	ncRNA:24   CAGAGCGUCAAAUGUCUGCCUUAG   1   *|||||||||||||||=||||||| targets:445   AUCUCGCAGUUUACAGGCGGAAUC   468 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget