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BaseInfo

ncRNA ID novel_osa_miR124
Species Oryza sativa
Class miRNA
Genome position Chr4:27647654-27647759 [-]
Reference genome IRGSP-1.0
Source SRR1738242;SRR1849771;SRR1849774;SRR2040386;SRR2040391;SRR2040394;SRR2040399;SRR2040404;SRR2040406;SRR2040407;SRR2857728;SRR2857729;SRR2857731;SRR3123652;SRR5049791;SRR1738227
Length 23
Mature sequence(if miRNA) 1 - UUGCGAGAUGUAUAAGUUGAAUU - 23
Stem-loop(if miRNA) --      C  C                  --       U    UUGAA  UGC
  UUCAAC UA ACAUCUCGUAACAAAAAA  AUAAAUU AACU     UA   G
  |||||| || ||||||||||||||||||  ||||||| ||||     ||
  AAGUUG AU UGUAGAGCGUUGUUUUUU  UAUUUAA UUGA     AU   U
UU      A  A                  UU       U    UGUUG  CAU
Stem-loop sequence UUCAACCUACACAUCUCGUAACAAAAAAAUAAAUUUAACUUUGAAUAUGCGUUACUAGUUGUAGUUUAAUUUAUUUUUUUUUGUUGCGAGAUGUAUAAGUUGAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015793191.1
ncRNA:23   UUAAGUUGAAUAUGUAGAGCGUU   1
  |||||||=||||||||||||=||
targets:454   AAUUCAAUUUAUACAUCUCGUAA   476

2.5 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA probable receptor-like protein kinase At1g67000(LOC4327950) coding protein psRNATarget
XM_015793197.1
ncRNA:23   UUAAGUUGAAUAUGUAGAGCGUU   1
  |||||||=||||||||||||=||
targets:456   AAUUCAAUUUAUACAUCUCGUAA   478

2.5 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X2, mRNA probable receptor-like protein kinase At1g67000(LOC4327950) coding protein psRNATarget
XM_015792915.1
ncRNA:23   UUAAGUUGAAUAUGUAGAGCGUU   1
  ||||=|||||*||||||||||||
targets:1889   AAUUUAACUUCUACAUCUCGCAA   1911

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA UDP-glycosyltransferase 89B1(LOC4345896) coding protein psRNATarget