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BaseInfo

ncRNA ID	novel_osa_miR114
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:40926242-40926344 [-]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR2097778;SRR4407957;SRR4407960;SRR4407961;SRR1300837
Length	24
Mature sequence(if miRNA)	80 - ACGGUUUUGUAAGUUGAGAGAUGU - 103
Stem-loop(if miRNA)	--   G   -      UU     AUGUU    G UG   GA GAUUUUGUAA      G   ACG UUU UGUAAG  GAGAG     UGCA U  GGG  C          UUCGAU A   ||| ||| ||||||  |||||     |||| |  |||  |          |||||| C   UGU AGG GCGUUC  UUUUC     AUGU G  UCC  G          GAGUUG A GU   G   U      CU     -----    G GU   AG ----------      A
Stem-loop sequence	ACGGUUUUGUAAGUUGAGAGAUGUUUGCAGUUGGGGGACGAUUUUGUAAUUCGAUGACAAGUUGAGGGACCUUGGGUGUACUUUUUCCUUGCGUGGAGUGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242927.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||||||||=|||||||||||| targets:1224   ACAUCUCUCAAUUUACAAAACCGU   1247 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090085H14, full insert sequence	NA	coding protein	psRNATarget
XM_015773830.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||||||||=|||||||||||| targets:1218   ACAUCUCUCAAUUUACAAAACCGU   1241 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270791 (LOC9270791), mRNA	uncharacterized LOC9270791(LOC9270791)	coding protein	psRNATarget
AK120395.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||*|||||||||||||||||| targets:1364   ACAUCCCUCAACUUACAAAACCGU   1387 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013075G01, full insert sequence	NA	coding protein	psRNATarget
JB164940.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||*|||||||||=|||||||| targets:194   ACAUCCCUCAACUUAUAAAACCGU   217 Target Full Sequence	2.5	Sequence 2604 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236609.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||*|||||||||=|||||||| targets:194   ACAUCCCUCAACUUAUAAAACCGU   217 Target Full Sequence	2.5	Sequence 2604 from Patent EP2985353	NA	coding protein	psRNATarget
HI404479.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||*|||||||||=|||||||| targets:194   ACAUCCCUCAACUUAUAAAACCGU   217 Target Full Sequence	2.5	Sequence 2604 from Patent EP2074227	NA	coding protein	psRNATarget
AK101027.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |||||*=||||||||||||||||| targets:2082   ACAUCCUUCAACUUACAAAACCGU   2105 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023150F02, full insert sequence	NA	coding protein	psRNATarget
XM_015790175.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |==||*||||||||||=||||||| targets:1967   AUGUCCCUCAACUUACGAAACCGU   1990 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 15-cis-phytoene desaturase, chloroplastic/chromoplastic (LOC4343973), mRNA	15-cis-phytoene desaturase, chloroplastic/chromoplastic(LOC4343973)	coding protein	psRNATarget
XM_015783142.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   =||||*|||||||*|||||||||| targets:190   GCAUCCCUCAACUAACAAAACCGU   213 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4338975 (LOC4338975), mRNA	uncharacterized LOC4338975(LOC4338975)	coding protein	psRNATarget
XM_015786761.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   |=|||*||||||||||||||||*| targets:215   AUAUCCCUCAACUUACAAAACCAU   238 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281246 (LOC107281246), mRNA	uncharacterized LOC107281246(LOC107281246)	coding protein	psRNATarget
XM_015768213.1	ncRNA:24   UGUAGAGAGUUGAAUGUUUUGGCA   1   =||||*|*|||||||||||||||* targets:322   GCAUCCCCCAACUUACAAAACCGG   345 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266724 (LOC9266724), mRNA	uncharacterized LOC9266724(LOC9266724)	coding protein	psRNATarget
AK288162.1	ncRNA:24   UGU--AGAGAGUUGAAUGUUUUGGCA   1   ||=--||*||=||||||||||||||* targets:2637   ACGGGUCCCUUAACUUACAAAACCGG   2662 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090001P20, full insert sequence	NA	coding protein	psRNATarget