Search result

BaseInfo

ncRNA ID	novel_osa_miR108
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:13359770-13359896 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR2040389;SRR2040410;SRR3123652;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - ACCGGGACUAAAGAUCUGAUCUUU - 24
Stem-loop(if miRNA)	--             AUCU           C         A           A         C   ACCGGGACUAAAG    GAUCUUUAGUC CGGUUGGUA CACCAACCGGG CUAAAGAUC C   |||||||||||||    ||||||||||| ||||||||| ||||||||||| ||||||||| G   UGGCCCUGAUUUC    CUAGAAAUCAG GCCAACCAU GUGGUUGGCCC GAUUUCUAG G GU             AAUU           A         C           C         U
Stem-loop sequence	ACCGGGACUAAAGAUCUGAUCUUUAGUCCCGGUUGGUAACACCAACCGGGACUAAAGAUCCCGGUGAUCUUUAGCCCCGGUUGGUGCUACCAACCGAGACUAAAGAUCUUAACUUUAGUCCCGGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   ||||||*=|||||||||||||||* targets:1783   AAAGAUAGGAUCUUUAGUCCCGGG   1806 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   UUUCUAGUC-UAGAAAUCAGGGCCA   1   ||||||*||-||||||||||||||| targets:61   AAAGAUGAGGAUCUUUAGUCCCGGU   85 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288438.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   *==||*=|*||||||||||||||| targets:2355   CGGGACUAAAUCUUUAGUCCCGGU   2378 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   *==||**||||||||||||||||| targets:2189   CGGGAAAAGAUCUUUAGUCCCGGU   2212 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   *==||*=|*||||||||||||||| targets:1897   CGGGACUAAAUCUUUAGUCCCGGU   1920 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   ||||**|*|||||||||||||||| targets:965   AAAGUGCUGAUCUUUAGUCCCGGU   988 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK288598.1	ncRNA:24   UUUCUAGU-CUAGAAAUCAGGGCCA   1   *|||-|=|-|||||||||||||||| targets:962   UAAG-UUACGAUCUUUAGUCCCGGU   985 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   =*|*||=*|||||||||||||||| targets:39   GCAUAUUUGAUCUUUAGUCCCGGU   62 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UUUCUAGUCUAGAAAUCAGGGCCA   1   *****||=|||||||||||||||| targets:1252   CCCCCUCGGAUCUUUAGUCCCGGU   1275 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   UUUCUAGU-CUAGAAAUCAGGGCCA   1   |***||*|-|||||||||||||||| targets:134   ACUAAUAAUGAUCUUUAGUCCCGGU   158 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget