Search result

BaseInfo

ncRNA ID	novel_osa_miR77
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:16512416-16512586 [+]
Reference genome	IRGSP-1.0
Source	SRR1738242;SRR1738244;SRR2857731;SRR2857732;SRR2857733;SRR2857736;SRR3123651;SRR3123652;SRR1738237;SRR1738240;SRR1738241
Length	24
Mature sequence(if miRNA)	148 - AAAAGUUGUAUGUCUUGAUGAGCU - 171
Stem-loop(if miRNA)	--           C                              CG C   G         C            A       CUA   CUCAUCAAGAU UAUAACUUUUAUUUUGGUCAUUUCUUCAUC  A AAA UGAUAAUAA AUUGUUCACAAA UUUGCAU   U   ||||||||||| ||||||||||||||||||||||||||||||  | ||| ||||||||| |||||||||||| |||||||   C   GAGUAGUUCUG AUGUUGAAAAUAAAAUCAGUAAAGAAGUAG  U UUU ACUAUUAUU UAACAAGUGUUU AAAUGUA   U UC           U                              AU A   A         A            C       UAC
Stem-loop sequence	CUCAUCAAGAUCUAUAACUUUUAUUUUGGUCAUUUCUUCAUCCGACAAAGUGAUAAUAACAUUGUUCACAAAAUUUGCAUCUAUCUCAUAUGUAAACUUUGUGAACAAUAUUAUUAUCAAUUUAUUAGAUGAAGAAAUGACUAAAAUAAAAGUUGUAUGUCUUGAUGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT829579.1	ncRNA:24   UCGA----GUAGUUCUGUAUGUUGAAAA   1   *|||----||||||*|||||||||*||| targets:379   UGCUAAUGCAUCAAAACAUACAACAUUU   406 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN052H03, full insert sequence	NA	coding protein	psRNATarget
AK067488.1	ncRNA:24   UCGA----GUAGUUCUGUAUGUUGAAAA   1   *|||----||||||*|||||||||*||| targets:1710   UGCUAAUGCAUCAAAACAUACAACAUUU   1737 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013110D20, full insert sequence	NA	coding protein	psRNATarget
XM_015756758.1	ncRNA:24   UCGA----GUAGUUCUGUAUGUUGAAAA   1   *|||----||||||*|||||||||*||| targets:1758   UGCUAAUGCAUCAAAACAUACAACAUUU   1785 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At2g33490 (LOC4347532), transcript variant X1, mRNA	uncharacterized protein At2g33490(LOC4347532)	coding protein	psRNATarget
XM_015756759.1	ncRNA:24   UCGA----GUAGUUCUGUAUGUUGAAAA   1   *|||----||||||*|||||||||*||| targets:1767   UGCUAAUGCAUCAAAACAUACAACAUUU   1794 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At2g33490 (LOC4347532), transcript variant X2, mRNA	uncharacterized protein At2g33490(LOC4347532)	coding protein	psRNATarget